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Protein
Submitted name:

LOC100127248 protein

Gene

lct.1

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Protein family/group databases

CAZyiGH1. Glycoside Hydrolase Family 1.

Names & Taxonomyi

Protein namesi
Submitted name:
LOC100127248 proteinImported
Gene namesi
Name:lct.1Imported
Synonyms:LOC100127248Imported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-5930998. lct.1.

Structurei

3D structure databases

ProteinModelPortaliA8WH42.
SMRiA8WH42. Positions 1-46.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 1 family.UniRule annotation

Phylogenomic databases

HOVERGENiHBG053101.
KOiK01229.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10353. PTHR10353. 1 hit.
PfamiPF00232. Glyco_hydro_1. 2 hits.
[Graphical view]
PRINTSiPR00131. GLHYDRLASE1.
SUPFAMiSSF51445. SSF51445. 2 hits.
PROSITEiPS00572. GLYCOSYL_HYDROL_F1_1. 1 hit.
PS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8WH42-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDTFEWNSGY SVRFGLHHVD FKNPSRPRTP KRSAIYYAEI IRNKGMPLSK
60 70 80 90 100
EDEFLYGEFS KDFAWSVASA SYQIEGAWRA DGKSLSIWDQ YAHTPLRIGN
110 120 130 140 150
DDNGDIACDS YNRIEQDVTA LKNLKVSHYR FSVSWSRILP DGTRNFVNEA
160 170 180 190 200
GLNYYVRLID ALLVANISPQ VTLYHWDLPQ VLQNIGGWEN DTIVEKFKDY
210 220 230 240 250
ADLLFQKLGD KVKFWITINE PYIVANLGYG YGTAAPGISS RPGRAPYIVG
260 270 280 290 300
HNLIKAHAEA WHLYNDKYRA SQGGLISITI NSDWAEPRNP YKQEDVEAAR
310 320 330 340 350
RYMMFYGGWF ANPIFNNGDY NEVMKSRVRE RSLASGLTQS RLPEFTESEK
360 370 380 390 400
QRIKGTFDYF GFNHYTTILA SPFNLPISQQ TYDADRGVAS TTDHSWLGSG
410 420 430 440 450
SFWLKVTPFG FRRILNWIKE EYNNPPILVT ENGISERGTD LNDVWREHYY
460 470 480 490 500
KEYINEALKA VKYDGVDLRG YTAWSLMDNF EWATGFAERF GLHYTNYSDP
510 520 530 540 550
ELARIPKKST KYYRSIILCN GFPDPSNGSP PCLEPETEGT TAPTVTTPPS
560 570 580 590 600
GENQEEAVSF LGLEISPSDA EVALYVEFAF LIAAVLGIVL LSVFYRKLAK

KPKMSNF
Length:607
Mass (Da):69,253
Last modified:January 14, 2008 - v1
Checksum:i764DCC64C42E3815
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC154965 mRNA. Translation: AAI54966.1.
RefSeqiNP_001106299.1. NM_001112828.1.
UniGeneiXl.56157.

Genome annotation databases

GeneIDi100127248.
KEGGixla:100127248.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC154965 mRNA. Translation: AAI54966.1.
RefSeqiNP_001106299.1. NM_001112828.1.
UniGeneiXl.56157.

3D structure databases

ProteinModelPortaliA8WH42.
SMRiA8WH42. Positions 1-46.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiGH1. Glycoside Hydrolase Family 1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi100127248.
KEGGixla:100127248.

Organism-specific databases

CTDi100127248.
XenbaseiXB-GENE-5930998. lct.1.

Phylogenomic databases

HOVERGENiHBG053101.
KOiK01229.

Family and domain databases

Gene3Di3.20.20.80. 2 hits.
InterProiIPR001360. Glyco_hydro_1.
IPR018120. Glyco_hydro_1_AS.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10353. PTHR10353. 1 hit.
PfamiPF00232. Glyco_hydro_1. 2 hits.
[Graphical view]
PRINTSiPR00131. GLHYDRLASE1.
SUPFAMiSSF51445. SSF51445. 2 hits.
PROSITEiPS00572. GLYCOSYL_HYDROL_F1_1. 1 hit.
PS00653. GLYCOSYL_HYDROL_F1_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. NIH - Xenopus Gene Collection (XGC) project
    Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: IntestineImported.

Entry informationi

Entry nameiA8WH42_XENLA
AccessioniPrimary (citable) accession number: A8WH42
Entry historyi
Integrated into UniProtKB/TrEMBL: January 14, 2008
Last sequence update: January 14, 2008
Last modified: September 30, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.