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A8WFR0 (LAMP5_DANRE) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Lysosome-associated membrane glycoprotein 5
Alternative name(s):
Lysosome-associated membrane protein 5
Short name=LAMP-5
Gene names
Name:lamp5
ORF Names:zgc:165600
OrganismDanio rerio (Zebrafish) (Brachydanio rerio) [Reference proteome]
Taxonomic identifier7955 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Protein attributes

Sequence length275 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subcellular location

Cell membrane; Single-pass type I membrane protein By similarity. Endoplasmic reticulum-Golgi intermediate compartment membrane; Single-pass type I membrane protein By similarity. Endosome membrane; Single-pass type I membrane protein By similarity. Cytoplasmic vesicle By similarity. Cell projectiondendrite By similarity. Cell projectiongrowth cone membrane By similarity. Early endosome membrane; Single-pass type I membrane protein By similarity. Recycling endosome By similarity.

Post-translational modification

Glycosylated By similarity.

Sequence similarities

Belongs to the LAMP family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 1818 Potential
Chain19 – 275257Lysosome-associated membrane glycoprotein 5
PRO_0000360415

Regions

Topological domain19 – 228210Extracellular Potential
Transmembrane229 – 24921Helical; Potential
Topological domain250 – 27526Cytoplasmic Potential

Amino acid modifications

Glycosylation241N-linked (GlcNAc...) Potential
Glycosylation421N-linked (GlcNAc...) Potential

Sequences

Sequence LengthMass (Da)Tools
A8WFR0 [UniParc].

Last modified January 15, 2008. Version 1.
Checksum: 20452432C6B9A8C5

FASTA27530,686
        10         20         30         40         50         60 
MEFQLLLLCS VWALGVCAEQ EVENLSGLST NPERDIFVVR ENGTTCLMAE FAVRFLIPYD 

        70         80         90        100        110        120 
VLALNGIDLI TEQTSVAIPR GAQIAGKCGP SESELQISWA AQAFNFHIYF SKEKRVQGSD 

       130        140        150        160        170        180 
GKAPEAEVWK INRVQLVYDT SENTHFINAY NPGKHTASTH RLSALVTPAG RSYVCAAQQT 

       190        200        210        220        230        240 
LTLISSDHQK GVTVSIYDIQ IQPFDINADF VFSEPYKCVT DQREQLEQTL PLVLGLILGL 

       250        260        270 
IIVITISVYH FHLKLNAAHT QQPTLPRDRS LYKNM 

« Hide

References

[1]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (NOV-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Eye.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BC154416 mRNA. Translation: AAI54417.1.
RefSeqNP_001107133.1. NM_001113661.1.
UniGeneDr.67298.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID100006791.
KEGGdre:100006791.

Organism-specific databases

ZFINZDB-GENE-080220-19. zgc:165600.

Phylogenomic databases

HOVERGENHBG051186.

Family and domain databases

InterProIPR018134. LAMP_CS.
IPR002000. Lysosome-assoc_membr_glycop.
[Graphical view]
PANTHERPTHR11506. PTHR11506. 1 hit.
PfamPF01299. Lamp. 1 hit.
[Graphical view]
PROSITEPS00310. LAMP_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20787271.

Entry information

Entry nameLAMP5_DANRE
AccessionPrimary (citable) accession number: A8WFR0
Entry history
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: January 15, 2008
Last modified: June 11, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families