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Protein
Submitted name:

DNA ligase

Gene

CC1G_07933

Organism
Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. zinc ion binding Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
ORF Names:CC1G_07933Imported
OrganismiCoprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata)Imported
Taxonomic identifieri240176 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesPsathyrellaceaeCoprinopsis
ProteomesiUP000001861 Componenti: Unassembled WGS sequence

Family & Domainsi

Phylogenomic databases

InParanoidiA8P6S5.
KOiK10747.
OrthoDBiEOG7WHHK6.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR007527. Znf_SWIM.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
PS50966. ZF_SWIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8P6S5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADELAEING IAPNVILEEG EEKEVGSSSR FVKGQPVNAR TCKHLKSLLG
60 70 80 90 100
DDYEAARLEL KGGSSPPVKT SKAKPAPKAK TAAKRKKPAD EDEEGEEEEE
110 120 130 140 150
KPAKRGRKAP ASGSKSKPAS KAKPSSRRGK PVDEDEQDDD EEEEEEERPA
160 170 180 190 200
KRARKAPTSK VSSKPPSKTT KVEPEEANDD DVMVVDSNEE LAEIDGIKPK
210 220 230 240 250
VILADGEVKE VKSATSKSVY KVKRSFDHFH CSCPAWRNQK GAQVNARTCK
260 270 280 290 300
HLQSLLGEEY EAARLQLKGG QKSSASKPPS KKPASKRSVK ADSEAEKPAS
310 320 330 340 350
KTKQAPASKG SARVKKELEE VKEEDKEAEG DGDEEMASVN DENEAPDGDD
360 370 380 390 400
ELAVINGIKP KVYLKDGEQT EVKSASSNSM YKVKRTWDHY YWSLADIPSF
410 420 430 440 450
QGGCPVNART CKHLQGLLGA DYEAARLKWK NPDGPAPRTA AAKGKGKGKS
460 470 480 490 500
DAPSSSTKSV PDLLLANKWD FETGIDPTGW WISEKLDGVR VLISAFWDGK
510 520 530 540 550
QFFSRLGNPF TPPKWFLETL PKDVKLDGEL FGGRQQFQST VSVVKTVNSP
560 570 580 590 600
HWKGISFQVF DIPSKASDPF EKRLETLDAL FGEGGSHKCS HVSIVEHVLA
610 620 630 640 650
KSRDHVLEKL KEIEELGGEG LMLRKPQSKY EGSRSNTLLK VKTFYDAEAV
660 670 680 690 700
VTGYEPGKGR NAGVTGALKC KMASGKTFNV GTGLSDKQRK NPPKIGSIIV
710 720 730 740
YRFQELTRDK VPRFPSFIGE AADKTEPKDA DIPPSRIAGA SGADA
Length:745
Mass (Da):81,296
Last modified:August 10, 2010 - v2
Checksum:i27AB3E42E4CDDA32
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACS02000005 Genomic DNA. Translation: EAU82651.2.
RefSeqiXP_001839218.2. XM_001839166.2.

Genome annotation databases

GeneIDi6015830.
KEGGicci:CC1G_07933.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACS02000005 Genomic DNA. Translation: EAU82651.2.
RefSeqiXP_001839218.2. XM_001839166.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi6015830.
KEGGicci:CC1G_07933.

Phylogenomic databases

InParanoidiA8P6S5.
KOiK10747.
OrthoDBiEOG7WHHK6.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR007527. Znf_SWIM.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
PS50966. ZF_SWIM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)."
    Stajich J.E., Wilke S.K., Ahren D., Au C.H., Birren B.W., Borodovsky M., Burns C., Canback B., Casselton L.A., Cheng C.K., Deng J., Dietrich F.S., Fargo D.C., Farman M.L., Gathman A.C., Goldberg J., Guigo R., Hoegger P.J.
    , Hooker J.B., Huggins A., James T.Y., Kamada T., Kilaru S., Kodira C., Kues U., Kupfer D., Kwan H.S., Lomsadze A., Li W., Lilly W.W., Ma L.J., Mackey A.J., Manning G., Martin F., Muraguchi H., Natvig D.O., Palmerini H., Ramesh M.A., Rehmeyer C.J., Roe B.A., Shenoy N., Stanke M., Ter-Hovhannisyan V., Tunlid A., Velagapudi R., Vision T.J., Zeng Q., Zolan M.E., Pukkila P.J.
    Proc. Natl. Acad. Sci. U.S.A. 107:11889-11894(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003Imported.

Entry informationi

Entry nameiA8P6S5_COPC7
AccessioniPrimary (citable) accession number: A8P6S5
Entry historyi
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: August 10, 2010
Last modified: March 4, 2015
This is version 33 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.