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A8P6S5

- A8P6S5_COPC7

UniProt

A8P6S5 - A8P6S5_COPC7

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Protein
Submitted name: DNA ligase
Gene
CC1G_07933
Organism
Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. zinc ion binding Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligaseImported
Gene namesi
ORF Names:CC1G_07933Imported
OrganismiCoprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata)Imported
Taxonomic identifieri240176 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesPsathyrellaceaeCoprinopsis
ProteomesiUP000001861: Unassembled WGS sequence

Family & Domainsi

Phylogenomic databases

KOiK01971.
OrthoDBiEOG7WHHK6.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR007527. Znf_SWIM.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
PS50966. ZF_SWIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8P6S5-1 [UniParc]FASTAAdd to Basket

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MADELAEING IAPNVILEEG EEKEVGSSSR FVKGQPVNAR TCKHLKSLLG    50
DDYEAARLEL KGGSSPPVKT SKAKPAPKAK TAAKRKKPAD EDEEGEEEEE 100
KPAKRGRKAP ASGSKSKPAS KAKPSSRRGK PVDEDEQDDD EEEEEEERPA 150
KRARKAPTSK VSSKPPSKTT KVEPEEANDD DVMVVDSNEE LAEIDGIKPK 200
VILADGEVKE VKSATSKSVY KVKRSFDHFH CSCPAWRNQK GAQVNARTCK 250
HLQSLLGEEY EAARLQLKGG QKSSASKPPS KKPASKRSVK ADSEAEKPAS 300
KTKQAPASKG SARVKKELEE VKEEDKEAEG DGDEEMASVN DENEAPDGDD 350
ELAVINGIKP KVYLKDGEQT EVKSASSNSM YKVKRTWDHY YWSLADIPSF 400
QGGCPVNART CKHLQGLLGA DYEAARLKWK NPDGPAPRTA AAKGKGKGKS 450
DAPSSSTKSV PDLLLANKWD FETGIDPTGW WISEKLDGVR VLISAFWDGK 500
QFFSRLGNPF TPPKWFLETL PKDVKLDGEL FGGRQQFQST VSVVKTVNSP 550
HWKGISFQVF DIPSKASDPF EKRLETLDAL FGEGGSHKCS HVSIVEHVLA 600
KSRDHVLEKL KEIEELGGEG LMLRKPQSKY EGSRSNTLLK VKTFYDAEAV 650
VTGYEPGKGR NAGVTGALKC KMASGKTFNV GTGLSDKQRK NPPKIGSIIV 700
YRFQELTRDK VPRFPSFIGE AADKTEPKDA DIPPSRIAGA SGADA 745
Length:745
Mass (Da):81,296
Last modified:August 10, 2010 - v2
Checksum:i27AB3E42E4CDDA32
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AACS02000005 Genomic DNA. Translation: EAU82651.2.
RefSeqiXP_001839218.2. XM_001839166.2.

Genome annotation databases

GeneIDi6015830.
KEGGicci:CC1G_07933.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AACS02000005 Genomic DNA. Translation: EAU82651.2 .
RefSeqi XP_001839218.2. XM_001839166.2.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 6015830.
KEGGi cci:CC1G_07933.

Phylogenomic databases

KOi K01971.
OrthoDBi EOG7WHHK6.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
IPR007527. Znf_SWIM.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
PS50966. ZF_SWIM. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)."
    Stajich J.E., Wilke S.K., Ahren D., Au C.H., Birren B.W., Borodovsky M., Burns C., Canbaeck B., Casselton L.A., Cheng C.K., Deng J., Dietrich F.S., Fargo D.C., Farman M.L., Gathman A.C., Goldberg J., Guigo R., Hoegger P.J.
    , Hooker J.B., Huggins A., James T.Y., Kamada T., Kilaru S., Kodira C., Kuees U., Kupfer D., Kwan H.S., Lomsadze A., Li W., Lilly W.W., Ma L.-J., Mackey A.J., Manning G., Martin F., Muraguchi H., Natvig D.O., Palmerini H., Ramesh M.A., Rehmeyer C.J., Roe B.A., Shenoy N., Stanke M., Ter-Hovhannisyan V., Tunlid A., Velagapudi R., Vision T.J., Zeng Q., Zolan M.E., Pukkila P.J.
    Proc. Natl. Acad. Sci. U.S.A. 107:11889-11894(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003.

Entry informationi

Entry nameiA8P6S5_COPC7
AccessioniPrimary (citable) accession number: A8P6S5
Entry historyi
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: August 10, 2010
Last modified: June 11, 2014
This is version 29 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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