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A8P6S5

- A8P6S5_COPC7

UniProt

A8P6S5 - A8P6S5_COPC7

Protein
Submitted name:

DNA ligase

Gene

CC1G_07933

Organism
Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 30 (01 Oct 2014)
      Sequence version 2 (10 Aug 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. zinc ion binding Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported
    Gene namesi
    ORF Names:CC1G_07933Imported
    OrganismiCoprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata)Imported
    Taxonomic identifieri240176 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesPsathyrellaceaeCoprinopsis
    ProteomesiUP000001861: Unassembled WGS sequence

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OrthoDBiEOG7WHHK6.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    IPR007527. Znf_SWIM.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    PS50966. ZF_SWIM. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A8P6S5-1 [UniParc]FASTAAdd to Basket

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    MADELAEING IAPNVILEEG EEKEVGSSSR FVKGQPVNAR TCKHLKSLLG    50
    DDYEAARLEL KGGSSPPVKT SKAKPAPKAK TAAKRKKPAD EDEEGEEEEE 100
    KPAKRGRKAP ASGSKSKPAS KAKPSSRRGK PVDEDEQDDD EEEEEEERPA 150
    KRARKAPTSK VSSKPPSKTT KVEPEEANDD DVMVVDSNEE LAEIDGIKPK 200
    VILADGEVKE VKSATSKSVY KVKRSFDHFH CSCPAWRNQK GAQVNARTCK 250
    HLQSLLGEEY EAARLQLKGG QKSSASKPPS KKPASKRSVK ADSEAEKPAS 300
    KTKQAPASKG SARVKKELEE VKEEDKEAEG DGDEEMASVN DENEAPDGDD 350
    ELAVINGIKP KVYLKDGEQT EVKSASSNSM YKVKRTWDHY YWSLADIPSF 400
    QGGCPVNART CKHLQGLLGA DYEAARLKWK NPDGPAPRTA AAKGKGKGKS 450
    DAPSSSTKSV PDLLLANKWD FETGIDPTGW WISEKLDGVR VLISAFWDGK 500
    QFFSRLGNPF TPPKWFLETL PKDVKLDGEL FGGRQQFQST VSVVKTVNSP 550
    HWKGISFQVF DIPSKASDPF EKRLETLDAL FGEGGSHKCS HVSIVEHVLA 600
    KSRDHVLEKL KEIEELGGEG LMLRKPQSKY EGSRSNTLLK VKTFYDAEAV 650
    VTGYEPGKGR NAGVTGALKC KMASGKTFNV GTGLSDKQRK NPPKIGSIIV 700
    YRFQELTRDK VPRFPSFIGE AADKTEPKDA DIPPSRIAGA SGADA 745
    Length:745
    Mass (Da):81,296
    Last modified:August 10, 2010 - v2
    Checksum:i27AB3E42E4CDDA32
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AACS02000005 Genomic DNA. Translation: EAU82651.2.
    RefSeqiXP_001839218.2. XM_001839166.2.

    Genome annotation databases

    GeneIDi6015830.
    KEGGicci:CC1G_07933.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AACS02000005 Genomic DNA. Translation: EAU82651.2 .
    RefSeqi XP_001839218.2. XM_001839166.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 6015830.
    KEGGi cci:CC1G_07933.

    Phylogenomic databases

    KOi K01971.
    OrthoDBi EOG7WHHK6.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    IPR007527. Znf_SWIM.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    PS50966. ZF_SWIM. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)."
      Stajich J.E., Wilke S.K., Ahren D., Au C.H., Birren B.W., Borodovsky M., Burns C., Canbaeck B., Casselton L.A., Cheng C.K., Deng J., Dietrich F.S., Fargo D.C., Farman M.L., Gathman A.C., Goldberg J., Guigo R., Hoegger P.J.
      , Hooker J.B., Huggins A., James T.Y., Kamada T., Kilaru S., Kodira C., Kuees U., Kupfer D., Kwan H.S., Lomsadze A., Li W., Lilly W.W., Ma L.-J., Mackey A.J., Manning G., Martin F., Muraguchi H., Natvig D.O., Palmerini H., Ramesh M.A., Rehmeyer C.J., Roe B.A., Shenoy N., Stanke M., Ter-Hovhannisyan V., Tunlid A., Velagapudi R., Vision T.J., Zeng Q., Zolan M.E., Pukkila P.J.
      Proc. Natl. Acad. Sci. U.S.A. 107:11889-11894(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003Imported.

    Entry informationi

    Entry nameiA8P6S5_COPC7
    AccessioniPrimary (citable) accession number: A8P6S5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: January 15, 2008
    Last sequence update: August 10, 2010
    Last modified: October 1, 2014
    This is version 30 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3