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A8N1F0

- A8N1F0_COPC7

UniProt

A8N1F0 - A8N1F0_COPC7

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Protein

DNA ligase

Gene

CC1G_11289

Organism
Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:CC1G_11289Imported
OrganismiCoprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata)Imported
Taxonomic identifieri240176 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaAgaricomycotinaAgaricomycetesAgaricomycetidaeAgaricalesPsathyrellaceaeCoprinopsis
ProteomesiUP000001861: Unassembled WGS sequence

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiA8N1F0.
KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 2 hits.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8N1F0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGRQQTLGKF FEMPKSMKPA PPQQSSLTEM WGKKRDVSTK SAPKKEEDAM
60 70 80 90 100
EVDLKQEAQA GPSKRKESAL ETKNSPKVKK RRIIESSDEE DEVASRASQS
110 120 130 140 150
IATSSRHVTP EPSEAASSSP VKKHVEGSRA VKPPHSDIDE ESIAASEPEA
160 170 180 190 200
DEDRDDVLLE DDEELNPVGG TESKSARAAL LKKDEVDIKG GWKVGQPVPY
210 220 230 240 250
AALAKTFSLI EATTKRLEKN AILTAFLLLV IQRSAKDDHK SLLQAVYLCI
260 270 280 290 300
NRLSPDYVGI ELGIGESLLI KAIAESTGRS LAVIKADLKK EGDLGLVAMN
310 320 330 340 350
SKNSQKTLFK PKPLTLPFVF TQLKDIALTT GNASQAKKVA LRANFALERR
360 370 380 390 400
AICTGFSRTA AVLAERERAD KKWSQDKLTA RLEEGAEIMK AVYSELPSYD
410 420 430 440 450
SVVPALLEGG IKGLRERCKL TPGIPLKPML AKPTKAIGEV LDRFENKRFT
460 470 480 490 500
CEYKYDGERA QIHRLDDGTV GVFSRNSEDM SKKYPDLVDQ LSKCIKKNTK
510 520 530 540 550
SFVLDSEAVA IDRTTGKLMP FQELSRRKRK DVKVEDIQVR VCIFAFDLLY
560 570 580 590 600
LNGEPLINKP LVERRDLLRK HFQVVPGEFD FAKSSDGEST DEIQTFLEES
610 620 630 640 650
VKDGCEGLMV KMLESDASNY EPSRRSVNWL KLKKDYLAGV GDSLDLVVVG
660 670 680 690 700
AYYGKGKRTN YYGAFLLACY DADSEEYQTI CKIGTGFSDE ALQTHYETLK
710 720 730 740 750
PLEQTKPRGD IKIGGAKPDI WFEPKVVWEV LTADLSLSPI YTAAQGLVEE
760 770 780 790 800
RGISLRFPRF IRVRDDKDAD DATAPEQIAE MYERQSLAQA GSKKKGGDDD

GFW
Length:803
Mass (Da):89,259
Last modified:August 10, 2010 - v2
Checksum:iFD46F5CAEF3ED909
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACS02000001 Genomic DNA. Translation: EAU93094.2.
RefSeqiXP_001828699.2. XM_001828647.2.

Genome annotation databases

GeneIDi6005130.
KEGGicci:CC1G_11289.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AACS02000001 Genomic DNA. Translation: EAU93094.2 .
RefSeqi XP_001828699.2. XM_001828647.2.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 6005130.
KEGGi cci:CC1G_11289.

Phylogenomic databases

InParanoidi A8N1F0.
KOi K10747.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 2 hits.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)."
    Stajich J.E., Wilke S.K., Ahren D., Au C.H., Birren B.W., Borodovsky M., Burns C., Canback B., Casselton L.A., Cheng C.K., Deng J., Dietrich F.S., Fargo D.C., Farman M.L., Gathman A.C., Goldberg J., Guigo R., Hoegger P.J.
    , Hooker J.B., Huggins A., James T.Y., Kamada T., Kilaru S., Kodira C., Kues U., Kupfer D., Kwan H.S., Lomsadze A., Li W., Lilly W.W., Ma L.J., Mackey A.J., Manning G., Martin F., Muraguchi H., Natvig D.O., Palmerini H., Ramesh M.A., Rehmeyer C.J., Roe B.A., Shenoy N., Stanke M., Ter-Hovhannisyan V., Tunlid A., Velagapudi R., Vision T.J., Zeng Q., Zolan M.E., Pukkila P.J.
    Proc. Natl. Acad. Sci. U.S.A. 107:11889-11894(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003Imported.

Entry informationi

Entry nameiA8N1F0_COPC7
AccessioniPrimary (citable) accession number: A8N1F0
Entry historyi
Integrated into UniProtKB/TrEMBL: January 15, 2008
Last sequence update: August 10, 2010
Last modified: October 29, 2014
This is version 40 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3