A8N1F0 (A8N1F0_COPC7) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
DNA ligase RuleBase RU000617
EC=6.5.1.1 RuleBase RU000617

Gene names

ORF Names:

CC1G_11289 EMBL EAU93094.2

Organism

Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) (Inky cap fungus) (Hormographiella aspergillata) [Reference proteome] EMBL EAU93094.2

Taxonomic identifier

240176 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Basidiomycota › Agaricomycotina › Agaricomycetes › Agaricomycetidae › Agaricales › Psathyrellaceae › Coprinopsis › Coprinopsis cinerea

Protein attributes

Sequence length	803 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617
Sequence similarities	Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196
Caution	The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Ontologies

Keywords
Biological process	DNA damage DNA recombination RuleBase RU000617 DNA repair RuleBase RU000617 DNA replication RuleBase RU000617
Ligand	ATP-binding RuleBase RU000617 Nucleotide-binding
Molecular function	Ligase RuleBase RU000617 EMBL EAU93094.2
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW DNA replication Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8N1F0 [UniParc]. Last modified August 10, 2010. Version 2. Checksum: FD46F5CAEF3ED909	FASTA	803	89,259
	10 20 30 40 50 60 MGRQQTLGKF FEMPKSMKPA PPQQSSLTEM WGKKRDVSTK SAPKKEEDAM EVDLKQEAQA 70 80 90 100 110 120 GPSKRKESAL ETKNSPKVKK RRIIESSDEE DEVASRASQS IATSSRHVTP EPSEAASSSP 130 140 150 160 170 180 VKKHVEGSRA VKPPHSDIDE ESIAASEPEA DEDRDDVLLE DDEELNPVGG TESKSARAAL 190 200 210 220 230 240 LKKDEVDIKG GWKVGQPVPY AALAKTFSLI EATTKRLEKN AILTAFLLLV IQRSAKDDHK 250 260 270 280 290 300 SLLQAVYLCI NRLSPDYVGI ELGIGESLLI KAIAESTGRS LAVIKADLKK EGDLGLVAMN 310 320 330 340 350 360 SKNSQKTLFK PKPLTLPFVF TQLKDIALTT GNASQAKKVA LRANFALERR AICTGFSRTA 370 380 390 400 410 420 AVLAERERAD KKWSQDKLTA RLEEGAEIMK AVYSELPSYD SVVPALLEGG IKGLRERCKL 430 440 450 460 470 480 TPGIPLKPML AKPTKAIGEV LDRFENKRFT CEYKYDGERA QIHRLDDGTV GVFSRNSEDM 490 500 510 520 530 540 SKKYPDLVDQ LSKCIKKNTK SFVLDSEAVA IDRTTGKLMP FQELSRRKRK DVKVEDIQVR 550 560 570 580 590 600 VCIFAFDLLY LNGEPLINKP LVERRDLLRK HFQVVPGEFD FAKSSDGEST DEIQTFLEES 610 620 630 640 650 660 VKDGCEGLMV KMLESDASNY EPSRRSVNWL KLKKDYLAGV GDSLDLVVVG AYYGKGKRTN 670 680 690 700 710 720 YYGAFLLACY DADSEEYQTI CKIGTGFSDE ALQTHYETLK PLEQTKPRGD IKIGGAKPDI 730 740 750 760 770 780 WFEPKVVWEV LTADLSLSPI YTAAQGLVEE RGISLRFPRF IRVRDDKDAD DATAPEQIAE 790 800 MYERQSLAQA GSKKKGGDDD GFW

References

[1]

"Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)." Stajich J.E., Wilke S.K., Ahren D., Au C.H., Birren B.W., Borodovsky M., Burns C., Canbaeck B., Casselton L.A., Cheng C.K., Deng J., Dietrich F.S., Fargo D.C., Farman M.L., Gathman A.C., Goldberg J., Guigo R., Hoegger P.J. , Hooker J.B., Huggins A., James T.Y., Kamada T., Kilaru S., Kodira C., Kuees U., Kupfer D., Kwan H.S., Lomsadze A., Li W., Lilly W.W., Ma L.-J., Mackey A.J., Manning G., Martin F., Muraguchi H., Natvig D.O., Palmerini H., Ramesh M.A., Rehmeyer C.J., Roe B.A., Shenoy N., Stanke M., Ter-Hovhannisyan V., Tunlid A., Velagapudi R., Vision T.J., Zeng Q., Zolan M.E., Pukkila P.J. Proc. Natl. Acad. Sci. U.S.A. 107:11889-11894(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AACS02000001 Genomic DNA. Translation: EAU93094.2.
RefSeq	XP_001828699.2. XM_001828647.2.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	6005130.
KEGG	cci:CC1G_11289.
Phylogenomic databases
KO	K10747.
OrthoDB	EOG4RV60K.
Family and domain databases
Gene3D	1.10.3260.10. 2 hits. 2.40.50.140. 1 hit.
InterPro	IPR000977. DNA_ligase_ATP-dep. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR00574. dnl1. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A8N1F0_COPC7

Accession

Primary (citable) accession number: A8N1F0

Entry history

Integrated into UniProtKB/TrEMBL:	January 15, 2008
Last sequence update:	August 10, 2010
Last modified:	March 6, 2013
This is version 36 of the entry and version 2 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)