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A8MSI8 (LYRM9_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 49. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
LYR motif-containing protein 9
Gene names
Name:LYRM9
Synonyms:C17orf108
ORF Names:HSD24
OrganismHomo sapiens (Human) [Reference proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length78 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the complex I LYR family. LYRM9 subfamily.

Sequence caution

The sequence AAP20058.1 differs from that shown. Reason: Erroneous translation. Wrong choice of CDS.

The sequence EAW51051.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 7878LYR motif-containing protein 9
PRO_0000345398

Sequences

Sequence LengthMass (Da)Tools
A8MSI8 [UniParc].

Last modified July 22, 2008. Version 2.
Checksum: 3E572BC92CCB24C3

FASTA789,374
        10         20         30         40         50         60 
MAPLPGAELV RRPLQLYRYL LRCCQQLPTK GIQQHYKHAV RQSFRVHSDE DNPERIQQII 

        70 
KRAIEDADWI MNKYKKQN 

« Hide

References

[1]"Full-length cDNA libraries and normalization."
Li W.B., Gruber C., Jessee J., Polayes D.
Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Fetal brain.
[2]"DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage."
Zody M.C., Garber M., Adams D.J., Sharpe T., Harrow J., Lupski J.R., Nicholson C., Searle S.M., Wilming L., Young S.K., Abouelleil A., Allen N.R., Bi W., Bloom T., Borowsky M.L., Bugalter B.E., Butler J., Chang J.L. expand/collapse author list , Chen C.-K., Cook A., Corum B., Cuomo C.A., de Jong P.J., DeCaprio D., Dewar K., FitzGerald M., Gilbert J., Gibson R., Gnerre S., Goldstein S., Grafham D.V., Grocock R., Hafez N., Hagopian D.S., Hart E., Norman C.H., Humphray S., Jaffe D.B., Jones M., Kamal M., Khodiyar V.K., LaButti K., Laird G., Lehoczky J., Liu X., Lokyitsang T., Loveland J., Lui A., Macdonald P., Major J.E., Matthews L., Mauceli E., McCarroll S.A., Mihalev A.H., Mudge J., Nguyen C., Nicol R., O'Leary S.B., Osoegawa K., Schwartz D.C., Shaw-Smith C., Stankiewicz P., Steward C., Swarbreck D., Venkataraman V., Whittaker C.A., Yang X., Zimmer A.R., Bradley A., Hubbard T., Birren B.W., Rogers J., Lander E.S., Nusbaum C.
Nature 440:1045-1049(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[3]Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., Turner R. expand/collapse author list , Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W., Venter J.C.
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[4]"A new spermatogenesis-related gene."
Wu N., Miao S.Y., Zhang X.D., Qiao Y., Liang G., Wang L.F.
Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 17-78.
Tissue: Testis.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR601114 mRNA. No translation available.
AC005697 Genomic DNA. No translation available.
CH471159 Genomic DNA. Translation: EAW51051.1. Sequence problems.
AY251535 mRNA. Translation: AAP20058.1. Sequence problems.
CCDSCCDS45631.1.
RefSeqNP_001070148.1. NM_001076680.1.
XP_005258000.1. XM_005257943.2.
XP_005258001.1. XM_005257944.2.
UniGeneHs.687951.

3D structure databases

ProteinModelPortalA8MSI8.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PaxDbA8MSI8.
PRIDEA8MSI8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000379102; ENSP00000368396; ENSG00000232859.
ENST00000379103; ENSP00000368397; ENSG00000232859.
GeneID201229.
KEGGhsa:201229.
UCSCuc002gzx.3. human.

Organism-specific databases

CTD201229.
GeneCardsGC17M026206.
HGNCHGNC:27314. LYRM9.
HPAHPA023051.
neXtProtNX_A8MSI8.
PharmGKBPA165431642.
GenAtlasSearch...

Phylogenomic databases

eggNOGNOG40483.
HOGENOMHOG000237835.
HOVERGENHBG108633.
PhylomeDBA8MSI8.
TreeFamTF335914.

Gene expression databases

ArrayExpressA8MSI8.
BgeeA8MSI8.
GenevestigatorA8MSI8.

Family and domain databases

InterProIPR008011. Complex1_LYR.
[Graphical view]
PfamPF05347. Complex1_LYR. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

GenomeRNAi201229.
NextBio90084.

Entry information

Entry nameLYRM9_HUMAN
AccessionPrimary (citable) accession number: A8MSI8
Secondary accession number(s): A6NJT7, Q6X7B8
Entry history
Integrated into UniProtKB/Swiss-Prot: July 22, 2008
Last sequence update: July 22, 2008
Last modified: July 9, 2014
This is version 49 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

SIMILARITY comments

Index of protein domains and families

Human chromosome 17

Human chromosome 17: entries, gene names and cross-references to MIM