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A8MSI8

- LYRM9_HUMAN

UniProt

A8MSI8 - LYRM9_HUMAN

Protein

LYR motif-containing protein 9

Gene

LYRM9

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
  1. Names & Taxonomyi

    Protein namesi
    Recommended name:
    LYR motif-containing protein 9
    Gene namesi
    Name:LYRM9
    Synonyms:C17orf108
    ORF Names:HSD24
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 17

    Organism-specific databases

    HGNCiHGNC:27314. LYRM9.

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA165431642.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7878LYR motif-containing protein 9PRO_0000345398Add
    BLAST

    Proteomic databases

    PaxDbiA8MSI8.
    PRIDEiA8MSI8.

    Expressioni

    Gene expression databases

    ArrayExpressiA8MSI8.
    BgeeiA8MSI8.
    GenevestigatoriA8MSI8.

    Organism-specific databases

    HPAiHPA023051.

    Structurei

    3D structure databases

    ProteinModelPortaliA8MSI8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the complex I LYR family. LYRM9 subfamily.Curated

    Phylogenomic databases

    eggNOGiNOG40483.
    HOGENOMiHOG000237835.
    HOVERGENiHBG108633.
    PhylomeDBiA8MSI8.
    TreeFamiTF335914.

    Family and domain databases

    InterProiIPR008011. Complex1_LYR.
    [Graphical view]
    PfamiPF05347. Complex1_LYR. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A8MSI8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAPLPGAELV RRPLQLYRYL LRCCQQLPTK GIQQHYKHAV RQSFRVHSDE   50
    DNPERIQQII KRAIEDADWI MNKYKKQN 78
    Length:78
    Mass (Da):9,374
    Last modified:July 22, 2008 - v2
    Checksum:i3E572BC92CCB24C3
    GO

    Sequence cautioni

    The sequence EAW51051.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CR601114 mRNA. No translation available.
    AC005697 Genomic DNA. No translation available.
    CH471159 Genomic DNA. Translation: EAW51051.1. Sequence problems.
    AY251535 mRNA. Translation: AAP20058.1. Sequence problems.
    CCDSiCCDS45631.1.
    RefSeqiNP_001070148.1. NM_001076680.1.
    XP_005258000.1. XM_005257943.2.
    XP_005258001.1. XM_005257944.2.
    UniGeneiHs.687951.

    Genome annotation databases

    EnsembliENST00000379102; ENSP00000368396; ENSG00000232859.
    ENST00000379103; ENSP00000368397; ENSG00000232859.
    GeneIDi201229.
    KEGGihsa:201229.
    UCSCiuc002gzx.3. human.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CR601114 mRNA. No translation available.
    AC005697 Genomic DNA. No translation available.
    CH471159 Genomic DNA. Translation: EAW51051.1 . Sequence problems.
    AY251535 mRNA. Translation: AAP20058.1 . Sequence problems.
    CCDSi CCDS45631.1.
    RefSeqi NP_001070148.1. NM_001076680.1.
    XP_005258000.1. XM_005257943.2.
    XP_005258001.1. XM_005257944.2.
    UniGenei Hs.687951.

    3D structure databases

    ProteinModelPortali A8MSI8.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PaxDbi A8MSI8.
    PRIDEi A8MSI8.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000379102 ; ENSP00000368396 ; ENSG00000232859 .
    ENST00000379103 ; ENSP00000368397 ; ENSG00000232859 .
    GeneIDi 201229.
    KEGGi hsa:201229.
    UCSCi uc002gzx.3. human.

    Organism-specific databases

    CTDi 201229.
    GeneCardsi GC17M026206.
    HGNCi HGNC:27314. LYRM9.
    HPAi HPA023051.
    neXtProti NX_A8MSI8.
    PharmGKBi PA165431642.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG40483.
    HOGENOMi HOG000237835.
    HOVERGENi HBG108633.
    PhylomeDBi A8MSI8.
    TreeFami TF335914.

    Miscellaneous databases

    GenomeRNAii 201229.
    NextBioi 90084.

    Gene expression databases

    ArrayExpressi A8MSI8.
    Bgeei A8MSI8.
    Genevestigatori A8MSI8.

    Family and domain databases

    InterProi IPR008011. Complex1_LYR.
    [Graphical view ]
    Pfami PF05347. Complex1_LYR. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Full-length cDNA libraries and normalization."
      Li W.B., Gruber C., Jessee J., Polayes D.
      Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: Fetal brain.
    2. "DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage."
      Zody M.C., Garber M., Adams D.J., Sharpe T., Harrow J., Lupski J.R., Nicholson C., Searle S.M., Wilming L., Young S.K., Abouelleil A., Allen N.R., Bi W., Bloom T., Borowsky M.L., Bugalter B.E., Butler J., Chang J.L.
      , Chen C.-K., Cook A., Corum B., Cuomo C.A., de Jong P.J., DeCaprio D., Dewar K., FitzGerald M., Gilbert J., Gibson R., Gnerre S., Goldstein S., Grafham D.V., Grocock R., Hafez N., Hagopian D.S., Hart E., Norman C.H., Humphray S., Jaffe D.B., Jones M., Kamal M., Khodiyar V.K., LaButti K., Laird G., Lehoczky J., Liu X., Lokyitsang T., Loveland J., Lui A., Macdonald P., Major J.E., Matthews L., Mauceli E., McCarroll S.A., Mihalev A.H., Mudge J., Nguyen C., Nicol R., O'Leary S.B., Osoegawa K., Schwartz D.C., Shaw-Smith C., Stankiewicz P., Steward C., Swarbreck D., Venkataraman V., Whittaker C.A., Yang X., Zimmer A.R., Bradley A., Hubbard T., Birren B.W., Rogers J., Lander E.S., Nusbaum C.
      Nature 440:1045-1049(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    4. "A new spermatogenesis-related gene."
      Wu N., Miao S.Y., Zhang X.D., Qiao Y., Liang G., Wang L.F.
      Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 17-78.
      Tissue: Testis.

    Entry informationi

    Entry nameiLYRM9_HUMAN
    AccessioniPrimary (citable) accession number: A8MSI8
    Secondary accession number(s): A6NJT7, Q6X7B8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 22, 2008
    Last sequence update: July 22, 2008
    Last modified: October 1, 2014
    This is version 50 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 17
      Human chromosome 17: entries, gene names and cross-references to MIM
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3