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Protein

LYR motif-containing protein 9

Gene

LYRM9

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
LYR motif-containing protein 9
Gene namesi
Name:LYRM9
Synonyms:C17orf108
ORF Names:HSD24
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 17

Organism-specific databases

HGNCiHGNC:27314. LYRM9.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA165431642.

Polymorphism and mutation databases

BioMutaiLYRM9.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7878LYR motif-containing protein 9PRO_0000345398Add
BLAST

Proteomic databases

PaxDbiA8MSI8.
PRIDEiA8MSI8.

Expressioni

Gene expression databases

BgeeiA8MSI8.
ExpressionAtlasiA8MSI8. baseline and differential.
GenevisibleiA8MSI8. HS.

Organism-specific databases

HPAiHPA023051.

Structurei

3D structure databases

ProteinModelPortaliA8MSI8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the complex I LYR family. LYRM9 subfamily.Curated

Phylogenomic databases

eggNOGiNOG40483.
GeneTreeiENSGT00390000002625.
HOGENOMiHOG000237835.
HOVERGENiHBG108633.
InParanoidiA8MSI8.
PhylomeDBiA8MSI8.
TreeFamiTF335914.

Family and domain databases

InterProiIPR008011. Complex1_LYR.
[Graphical view]
PfamiPF05347. Complex1_LYR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8MSI8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPLPGAELV RRPLQLYRYL LRCCQQLPTK GIQQHYKHAV RQSFRVHSDE
60 70
DNPERIQQII KRAIEDADWI MNKYKKQN
Length:78
Mass (Da):9,374
Last modified:July 22, 2008 - v2
Checksum:i3E572BC92CCB24C3
GO

Sequence cautioni

The sequence AAP20058.1 differs from that shown. Reason: Erroneous translation. Wrong choice of CDS.Curated
The sequence EAW51051.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR601114 mRNA. No translation available.
AC005697 Genomic DNA. No translation available.
CH471159 Genomic DNA. Translation: EAW51051.1. Sequence problems.
AY251535 mRNA. Translation: AAP20058.1. Sequence problems.
CCDSiCCDS45631.1.
RefSeqiNP_001070148.1. NM_001076680.1.
UniGeneiHs.687951.

Genome annotation databases

EnsembliENST00000379102; ENSP00000368396; ENSG00000232859.
ENST00000379103; ENSP00000368397; ENSG00000232859.
GeneIDi201229.
KEGGihsa:201229.
UCSCiuc002gzx.3. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR601114 mRNA. No translation available.
AC005697 Genomic DNA. No translation available.
CH471159 Genomic DNA. Translation: EAW51051.1. Sequence problems.
AY251535 mRNA. Translation: AAP20058.1. Sequence problems.
CCDSiCCDS45631.1.
RefSeqiNP_001070148.1. NM_001076680.1.
UniGeneiHs.687951.

3D structure databases

ProteinModelPortaliA8MSI8.
ModBaseiSearch...
MobiDBiSearch...

Polymorphism and mutation databases

BioMutaiLYRM9.

Proteomic databases

PaxDbiA8MSI8.
PRIDEiA8MSI8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000379102; ENSP00000368396; ENSG00000232859.
ENST00000379103; ENSP00000368397; ENSG00000232859.
GeneIDi201229.
KEGGihsa:201229.
UCSCiuc002gzx.3. human.

Organism-specific databases

CTDi201229.
GeneCardsiGC17M026206.
HGNCiHGNC:27314. LYRM9.
HPAiHPA023051.
neXtProtiNX_A8MSI8.
PharmGKBiPA165431642.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG40483.
GeneTreeiENSGT00390000002625.
HOGENOMiHOG000237835.
HOVERGENiHBG108633.
InParanoidiA8MSI8.
PhylomeDBiA8MSI8.
TreeFamiTF335914.

Miscellaneous databases

GenomeRNAii201229.
NextBioi90084.
PROiA8MSI8.

Gene expression databases

BgeeiA8MSI8.
ExpressionAtlasiA8MSI8. baseline and differential.
GenevisibleiA8MSI8. HS.

Family and domain databases

InterProiIPR008011. Complex1_LYR.
[Graphical view]
PfamiPF05347. Complex1_LYR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Full-length cDNA libraries and normalization."
    Li W.B., Gruber C., Jessee J., Polayes D.
    Submitted (JUL-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Fetal brain.
  2. "DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage."
    Zody M.C., Garber M., Adams D.J., Sharpe T., Harrow J., Lupski J.R., Nicholson C., Searle S.M., Wilming L., Young S.K., Abouelleil A., Allen N.R., Bi W., Bloom T., Borowsky M.L., Bugalter B.E., Butler J., Chang J.L.
    , Chen C.-K., Cook A., Corum B., Cuomo C.A., de Jong P.J., DeCaprio D., Dewar K., FitzGerald M., Gilbert J., Gibson R., Gnerre S., Goldstein S., Grafham D.V., Grocock R., Hafez N., Hagopian D.S., Hart E., Norman C.H., Humphray S., Jaffe D.B., Jones M., Kamal M., Khodiyar V.K., LaButti K., Laird G., Lehoczky J., Liu X., Lokyitsang T., Loveland J., Lui A., Macdonald P., Major J.E., Matthews L., Mauceli E., McCarroll S.A., Mihalev A.H., Mudge J., Nguyen C., Nicol R., O'Leary S.B., Osoegawa K., Schwartz D.C., Shaw-Smith C., Stankiewicz P., Steward C., Swarbreck D., Venkataraman V., Whittaker C.A., Yang X., Zimmer A.R., Bradley A., Hubbard T., Birren B.W., Rogers J., Lander E.S., Nusbaum C.
    Nature 440:1045-1049(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  4. "A new spermatogenesis-related gene."
    Wu N., Miao S.Y., Zhang X.D., Qiao Y., Liang G., Wang L.F.
    Submitted (MAR-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 17-78.
    Tissue: Testis.

Entry informationi

Entry nameiLYRM9_HUMAN
AccessioniPrimary (citable) accession number: A8MSI8
Secondary accession number(s): A6NJT7, Q6X7B8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 22, 2008
Last sequence update: July 22, 2008
Last modified: June 24, 2015
This is version 54 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 17
    Human chromosome 17: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.