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Protein

F-box protein At2g43440

Gene

At2g43440

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
F-box protein At2g43440
Gene namesi
Ordered Locus Names:At2g43440
ORF Names:T1O24.18
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548 Componenti: Chromosome 2

Organism-specific databases

TAIRiAT2G43440.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 401401F-box protein At2g43440PRO_0000396066Add
BLAST

Proteomic databases

PRIDEiA8MS20.

Expressioni

Gene expression databases

GenevestigatoriA8MS20.

Structurei

3D structure databases

ProteinModelPortaliA8MS20.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini7 – 5347F-boxAdd
BLAST

Sequence similaritiesi

Contains 1 F-box domain.Curated

Phylogenomic databases

eggNOGiNOG286620.
HOGENOMiHOG000015202.
PhylomeDBiA8MS20.

Family and domain databases

InterProiIPR006527. F-box-assoc_dom_typ1.
IPR017451. F-box-assoc_interact_dom.
IPR001810. F-box_dom.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF07734. FBA_1. 1 hit.
[Graphical view]
SMARTiSM00256. FBOX. 1 hit.
[Graphical view]
SUPFAMiSSF81383. SSF81383. 1 hit.
TIGRFAMsiTIGR01640. F_box_assoc_1. 1 hit.

Sequencei

Sequence statusi: Complete.

A8MS20-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEEKRENTNS IYIVPELLED IFLRLPLKSI LKFKTVSRQW RSILESKLFV
60 70 80 90 100
ERRGNLQKHH RKILAAYNCN YFMRPSIFPE SRFEGDEEIV YLHCDAAQPS
110 120 130 140 150
MTCDGLLCIT EPGWFNVLNP SAGQLRRFPP GPGPVKGPQE NWLLGFGRDN
160 170 180 190 200
VTGRYKIVRM CFHDCYEFGI LDIETGVWSK LRSPPHNMLP GSKSVCVNGS
210 220 230 240 250
IYWLQISAGY IILAMDLHEE SYHGVHHLPA TWVTQETQLV NLEDRLAMAM
260 270 280 290 300
TTNVGPEWIL EIWSMDIEGK GWSKGYSWSK SYSISLAHGV GFSWPWQKRW
310 320 330 340 350
FTPVWVSKQG NLLFYDNHKR LFKYYSGTDE IRCLSSNICV ISSYVENLAP
360 370 380 390 400
LPLKPSHTHH DLGNSNSKFS TSRCHLFPTR GSWISKVLFT SILFGYICLP

L
Length:401
Mass (Da):46,192
Last modified:December 4, 2007 - v1
Checksum:iE51FEA8A4E28F337
GO

Sequence cautioni

The sequence AAB64340.1 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At2g43440 has been split into 2 genes: At2g43440 and At2g43445.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002335 Genomic DNA. Translation: AAB64340.1. Sequence problems.
CP002685 Genomic DNA. Translation: AEC10269.1.
AY500328 mRNA. No translation available.
RefSeqiNP_181872.3. NM_129905.3.
UniGeneiAt.71266.

Genome annotation databases

EnsemblPlantsiAT2G43440.1; AT2G43440.1; AT2G43440.
GeneIDi818945.
KEGGiath:AT2G43440.

Cross-referencesi

Web resourcesi

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC002335 Genomic DNA. Translation: AAB64340.1. Sequence problems.
CP002685 Genomic DNA. Translation: AEC10269.1.
AY500328 mRNA. No translation available.
RefSeqiNP_181872.3. NM_129905.3.
UniGeneiAt.71266.

3D structure databases

ProteinModelPortaliA8MS20.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiA8MS20.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT2G43440.1; AT2G43440.1; AT2G43440.
GeneIDi818945.
KEGGiath:AT2G43440.

Organism-specific databases

TAIRiAT2G43440.

Phylogenomic databases

eggNOGiNOG286620.
HOGENOMiHOG000015202.
PhylomeDBiA8MS20.

Miscellaneous databases

PROiA8MS20.

Gene expression databases

GenevestigatoriA8MS20.

Family and domain databases

InterProiIPR006527. F-box-assoc_dom_typ1.
IPR017451. F-box-assoc_interact_dom.
IPR001810. F-box_dom.
[Graphical view]
PfamiPF00646. F-box. 1 hit.
PF07734. FBA_1. 1 hit.
[Graphical view]
SMARTiSM00256. FBOX. 1 hit.
[Graphical view]
SUPFAMiSSF81383. SSF81383. 1 hit.
TIGRFAMsiTIGR01640. F_box_assoc_1. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2 reveals numerous transcript variants."
    Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L., Ayele M., Haas B.J., Wu H.C., Town C.D.
    Plant Physiol. 139:1323-1337(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 6-383.
    Strain: cv. Columbia.

Entry informationi

Entry nameiFB350_ARATH
AccessioniPrimary (citable) accession number: A8MS20
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 10, 2010
Last sequence update: December 4, 2007
Last modified: April 29, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.