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A8MS20

- FB350_ARATH

UniProt

A8MS20 - FB350_ARATH

Protein

F-box protein At2g43440

Gene

At2g43440

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 43 (01 Oct 2014)
      Sequence version 1 (04 Dec 2007)
      Previous versions | rss
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    Names & Taxonomyi

    Protein namesi
    Recommended name:
    F-box protein At2g43440
    Gene namesi
    Ordered Locus Names:At2g43440
    ORF Names:T1O24.18
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 2

    Organism-specific databases

    TAIRiAT2G43440.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 401401F-box protein At2g43440PRO_0000396066Add
    BLAST

    Proteomic databases

    PRIDEiA8MS20.

    Expressioni

    Gene expression databases

    GenevestigatoriA8MS20.

    Structurei

    3D structure databases

    ProteinModelPortaliA8MS20.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini7 – 5347F-boxAdd
    BLAST

    Sequence similaritiesi

    Contains 1 F-box domain.Curated

    Phylogenomic databases

    eggNOGiNOG286620.
    HOGENOMiHOG000015202.
    OMAiKLFVERR.
    PhylomeDBiA8MS20.

    Family and domain databases

    InterProiIPR006527. F-box-assoc_dom_typ1.
    IPR017451. F-box-assoc_interact_dom.
    IPR001810. F-box_dom.
    [Graphical view]
    PfamiPF00646. F-box. 1 hit.
    PF07734. FBA_1. 1 hit.
    [Graphical view]
    SMARTiSM00256. FBOX. 1 hit.
    [Graphical view]
    SUPFAMiSSF81383. SSF81383. 1 hit.
    TIGRFAMsiTIGR01640. F_box_assoc_1. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A8MS20-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEEKRENTNS IYIVPELLED IFLRLPLKSI LKFKTVSRQW RSILESKLFV    50
    ERRGNLQKHH RKILAAYNCN YFMRPSIFPE SRFEGDEEIV YLHCDAAQPS 100
    MTCDGLLCIT EPGWFNVLNP SAGQLRRFPP GPGPVKGPQE NWLLGFGRDN 150
    VTGRYKIVRM CFHDCYEFGI LDIETGVWSK LRSPPHNMLP GSKSVCVNGS 200
    IYWLQISAGY IILAMDLHEE SYHGVHHLPA TWVTQETQLV NLEDRLAMAM 250
    TTNVGPEWIL EIWSMDIEGK GWSKGYSWSK SYSISLAHGV GFSWPWQKRW 300
    FTPVWVSKQG NLLFYDNHKR LFKYYSGTDE IRCLSSNICV ISSYVENLAP 350
    LPLKPSHTHH DLGNSNSKFS TSRCHLFPTR GSWISKVLFT SILFGYICLP 400
    L 401
    Length:401
    Mass (Da):46,192
    Last modified:December 4, 2007 - v1
    Checksum:iE51FEA8A4E28F337
    GO

    Sequence cautioni

    The sequence AAB64340.1 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At2g43440 has been split into 2 genes: At2g43440 and At2g43445.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC002335 Genomic DNA. Translation: AAB64340.1. Sequence problems.
    CP002685 Genomic DNA. Translation: AEC10269.1.
    AY500328 mRNA. No translation available.
    RefSeqiNP_181872.3. NM_129905.3.
    UniGeneiAt.71266.

    Genome annotation databases

    EnsemblPlantsiAT2G43440.1; AT2G43440.1; AT2G43440.
    GeneIDi818945.
    KEGGiath:AT2G43440.

    Cross-referencesi

    Web resourcesi

    PlantsUBQ

    A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC002335 Genomic DNA. Translation: AAB64340.1 . Sequence problems.
    CP002685 Genomic DNA. Translation: AEC10269.1 .
    AY500328 mRNA. No translation available.
    RefSeqi NP_181872.3. NM_129905.3.
    UniGenei At.71266.

    3D structure databases

    ProteinModelPortali A8MS20.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi A8MS20.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT2G43440.1 ; AT2G43440.1 ; AT2G43440 .
    GeneIDi 818945.
    KEGGi ath:AT2G43440.

    Organism-specific databases

    TAIRi AT2G43440.

    Phylogenomic databases

    eggNOGi NOG286620.
    HOGENOMi HOG000015202.
    OMAi KLFVERR.
    PhylomeDBi A8MS20.

    Gene expression databases

    Genevestigatori A8MS20.

    Family and domain databases

    InterProi IPR006527. F-box-assoc_dom_typ1.
    IPR017451. F-box-assoc_interact_dom.
    IPR001810. F-box_dom.
    [Graphical view ]
    Pfami PF00646. F-box. 1 hit.
    PF07734. FBA_1. 1 hit.
    [Graphical view ]
    SMARTi SM00256. FBOX. 1 hit.
    [Graphical view ]
    SUPFAMi SSF81383. SSF81383. 1 hit.
    TIGRFAMsi TIGR01640. F_box_assoc_1. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2 reveals numerous transcript variants."
      Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L., Ayele M., Haas B.J., Wu H.C., Town C.D.
      Plant Physiol. 139:1323-1337(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 6-383.
      Strain: cv. Columbia.

    Entry informationi

    Entry nameiFB350_ARATH
    AccessioniPrimary (citable) accession number: A8MS20
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 10, 2010
    Last sequence update: December 4, 2007
    Last modified: October 1, 2014
    This is version 43 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3