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A8MS20 (FB350_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
F-box protein At2g43440
Gene names
Ordered Locus Names:At2g43440
ORF Names:T1O24.18
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis

Protein attributes

Sequence length401 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 F-box domain.

Sequence caution

The sequence AAB64340.1 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At2g43440 has been split into 2 genes: At2g43440 and At2g43445.

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 401401F-box protein At2g43440
PRO_0000396066

Regions

Domain7 – 5347F-box

Sequences

Sequence LengthMass (Da)Tools
A8MS20 [UniParc].

Last modified December 4, 2007. Version 1.
Checksum: E51FEA8A4E28F337

FASTA40146,192
        10         20         30         40         50         60 
MEEKRENTNS IYIVPELLED IFLRLPLKSI LKFKTVSRQW RSILESKLFV ERRGNLQKHH 

        70         80         90        100        110        120 
RKILAAYNCN YFMRPSIFPE SRFEGDEEIV YLHCDAAQPS MTCDGLLCIT EPGWFNVLNP 

       130        140        150        160        170        180 
SAGQLRRFPP GPGPVKGPQE NWLLGFGRDN VTGRYKIVRM CFHDCYEFGI LDIETGVWSK 

       190        200        210        220        230        240 
LRSPPHNMLP GSKSVCVNGS IYWLQISAGY IILAMDLHEE SYHGVHHLPA TWVTQETQLV 

       250        260        270        280        290        300 
NLEDRLAMAM TTNVGPEWIL EIWSMDIEGK GWSKGYSWSK SYSISLAHGV GFSWPWQKRW 

       310        320        330        340        350        360 
FTPVWVSKQG NLLFYDNHKR LFKYYSGTDE IRCLSSNICV ISSYVENLAP LPLKPSHTHH 

       370        380        390        400 
DLGNSNSKFS TSRCHLFPTR GSWISKVLFT SILFGYICLP L 

« Hide

References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana."
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. expand/collapse author list , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.
Nature 402:761-768(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[3]"Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2 reveals numerous transcript variants."
Xiao Y.-L., Smith S.R., Ishmael N., Redman J.C., Kumar N., Monaghan E.L., Ayele M., Haas B.J., Wu H.C., Town C.D.
Plant Physiol. 139:1323-1337(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 6-383.
Strain: cv. Columbia.
+Additional computationally mapped references.

Web resources

PlantsUBQ

A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC002335 Genomic DNA. Translation: AAB64340.1. Sequence problems.
CP002685 Genomic DNA. Translation: AEC10269.1.
AY500328 mRNA. No translation available.
RefSeqNP_181872.3. NM_129905.3.
UniGeneAt.71266.

3D structure databases

ProteinModelPortalA8MS20.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEA8MS20.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT2G43440.1; AT2G43440.1; AT2G43440.
GeneID818945.
KEGGath:AT2G43440.

Organism-specific databases

TAIRAT2G43440.

Phylogenomic databases

eggNOGNOG286620.
HOGENOMHOG000015202.
OMAKLFVERR.
PhylomeDBA8MS20.

Gene expression databases

GenevestigatorA8MS20.

Family and domain databases

InterProIPR006527. F-box-assoc_dom_typ1.
IPR017451. F-box-assoc_interact_dom.
IPR001810. F-box_dom.
[Graphical view]
PfamPF00646. F-box. 1 hit.
PF07734. FBA_1. 1 hit.
[Graphical view]
SMARTSM00256. FBOX. 1 hit.
[Graphical view]
SUPFAMSSF81383. SSF81383. 1 hit.
TIGRFAMsTIGR01640. F_box_assoc_1. 1 hit.
ProtoNetSearch...

Entry information

Entry nameFB350_ARATH
AccessionPrimary (citable) accession number: A8MS20
Entry history
Integrated into UniProtKB/Swiss-Prot: August 10, 2010
Last sequence update: December 4, 2007
Last modified: June 11, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names