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Protein
Submitted name:

DNA polymerase LigD ligase region

Gene

Sare_4352

Organism
Salinispora arenicola (strain CNS-205)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSARE391037:GH66-4405-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA polymerase LigD ligase regionImported
Gene namesi
Ordered Locus Names:Sare_4352Imported
OrganismiSalinispora arenicola (strain CNS-205)Imported
Taxonomic identifieri391037 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaMicromonosporalesMicromonosporaceaeSalinispora
ProteomesiUP000001153 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi391037.Sare_4352.

Structurei

3D structure databases

ProteinModelPortaliA8M566.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiVEVKYGQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8M566-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPGVPPKPML AMTGELPAGA GWAYEFKWDG IRALADLSGG RRHVYARSGV
60 70 80 90 100
EVTVAYPELA GLPAQVDNAL LDGEVVLFGA AGQPSFTALA ERMHVRESGR
110 120 130 140 150
AARLAATLPV TYLIFDLLRL DGVDLTGHSW QQRRAALDGL GLAGPRWAVP
160 170 180 190 200
PVFWDGPATY QAAGEHGLEG VMAKRVGSIY RPGTRSPDWV KVKLEVTGDF
210 220 230 240 250
VVGGWRPGAR RLGGLLVGVP RPDGRLTFRG RVGGGIGAAL ERELLRELEP
260 270 280 290 300
LRAAGSPFAG DLPREDARTA VWVSPRVVVE VKYGQLTPDG RLRFPRVLRL
310
RPDKPAEEVD DAG
Length:313
Mass (Da):33,657
Last modified:December 4, 2007 - v1
Checksum:iC920E2FC0FB62449
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000850 Genomic DNA. Translation: ABW00134.1.
RefSeqiWP_012184360.1. NC_009953.1.

Genome annotation databases

EnsemblBacteriaiABW00134; ABW00134; Sare_4352.
GeneIDi5708420.
KEGGisaq:Sare_4352.
PATRICi23437295. VBISalAre38676_4393.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000850 Genomic DNA. Translation: ABW00134.1.
RefSeqiWP_012184360.1. NC_009953.1.

3D structure databases

ProteinModelPortaliA8M566.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi391037.Sare_4352.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABW00134; ABW00134; Sare_4352.
GeneIDi5708420.
KEGGisaq:Sare_4352.
PATRICi23437295. VBISalAre38676_4393.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222509.
KOiK01971.
OMAiVEVKYGQ.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciSARE391037:GH66-4405-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CNS-205Imported.

Entry informationi

Entry nameiA8M566_SALAI
AccessioniPrimary (citable) accession number: A8M566
Entry historyi
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: July 22, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.