A8M501 (A8M501_SALAI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S4 1 HAMAP MF_01306

Gene names

Name:	rpsD1 HAMAP MF_01306
Ordered Locus Names:	Sare_4287

Organism

Salinispora arenicola (strain CNS-205) [Complete proteome] [HAMAP] EMBL ABW00069.1

Taxonomic identifier

391037 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Micromonosporineae › Micromonosporaceae › Salinispora

Protein attributes

Sequence length	208 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit By similarity. HAMAP MF_01306 With S5 and S12 plays an important role in translational accuracy By similarity. HAMAP MF_01306
Subunit structure	Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity By similarity. HAMAP MF_01306
Sequence similarities	Belongs to the ribosomal protein S4P family. HAMAP MF_01306 Contains 1 S4 RNA-binding domain. HAMAP MF_01306

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP MF_01306
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP MF_01306
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	small ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	98 – 163	66	S4 RNA-binding By similarity HAMAP MF_01306

Sequences

	Sequence		Length	Mass (Da)
	A8M501 [UniParc]. Last modified December 4, 2007. Version 1. Checksum: E5E3691063E9B6CB	FASTA	208	23,894
	10 20 30 40 50 60 MARYTGADCR RCRREKMKLF LKGSKCDGPK CPFESRPFPP GQHGRGRTKE TEYLLQLREK 70 80 90 100 110 120 QKARRVYGVL EKQFRGYYEE AVAKQAKTGE VLLQILESRL DNVVYRAGYA KSRDMARQLV 130 140 150 160 170 180 KHGHFTVNGR KVDIPSYRVK EHDIVEVRGK SKELTPFLVA QAESGSKSVP AWLEAIPSQM 190 200 KVLVHSLPSR QVIDTQVQEQ LIVELYSK

References

[1]

"Complete sequence of Salinispora arenicola CNS-205." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Foster B., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Jensen P.R., Moore B.S., Penn K. , Jenkins C., Udwary D., Xiang L., Gontang E., Richardson P. Submitted (OCT-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CNS-205.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000850 Genomic DNA. Translation: ABW00069.1.
RefSeq	YP_001539059.1. NC_009953.1.
3D structure databases
ProteinModelPortal	A8M501.
SMR	A8M501. Positions 2-208.
ModBase	Search...
Protein-protein interaction databases
STRING	A8M501.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5706999.
GenomeReviews	Gene locus Sare_4287 in contig CP000850_GR.
KEGG	saq:Sare_4287.
PATRIC	23437159. VBISalAre38676_4328.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG285740.
OMA	QLVVELY.
ProtClustDB	PRK05327.
Enzyme and pathway databases
BioCyc	SARE391037:SARE_4287-MONOMER.
Family and domain databases
HAMAP	MF_01306_B. Ribosomal_S4_B. [Tree]
InterPro	IPR022801. Ribosomal_S4/S9. IPR001912. Ribosomal_S4/S9_N. IPR005709. Ribosomal_S4_bac-type. IPR018079. Ribosomal_S4_CS. IPR002942. S4_RNA-bd. [Graphical view]
Gene3D	G3DSA:1.10.1050.10. G3DSA:1.10.1050.10. 1 hit. G3DSA:3.10.290.10. G3DSA:3.10.290.10. 1 hit.
KO	K02986.
PANTHER	PTHR11831. Ribosomal_S4. 1 hit.
Pfam	PF00163. Ribosomal_S4. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
TIGRFAMs	TIGR01017. RpsD_bact. 1 hit.
PROSITE	PS00632. RIBOSOMAL_S4. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A8M501_SALAI

Accession

Primary (citable) accession number: A8M501

Entry history

Integrated into UniProtKB/TrEMBL:	December 4, 2007
Last sequence update:	December 4, 2007
Last modified:	December 14, 2011
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)