Skip Header

Contribute Send feedback
Read comments (?) or add your own

A8LLB8 (A8LLB8_DINSH) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Peptide deformylase 1 HAMAP MF_00163
Short name=PDF 1 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 1 HAMAP MF_00163
Gene names
Name:def1 HAMAP MF_00163 EMBL ABV91928.1
Ordered Locus Names:Dshi_0179
OrganismDinoroseobacter shibae (strain DFL 12) [Complete proteome] [HAMAP]
Taxonomic identifier398580 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Dinoroseobacter

Protein attributes

Sequence length187 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163 RuleBase RU003335

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1501 By similarity HAMAP MF_00163
Metal binding1071Iron By similarity HAMAP MF_00163
Metal binding1491Iron By similarity HAMAP MF_00163
Metal binding1531Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
A8LLB8 [UniParc].

Last modified December 4, 2007. Version 1.
Checksum: 84A5669B285211A9

FASTA18720,896
        10         20         30         40         50         60 
MLRPGGAWIT STGMTIRPIL IHPDPRLKKT VDPVAEITDE IRQLADDMLA TMYDAPGIGL 

        70         80         90        100        110        120 
AGPQVAAMTR IITMDCAPKD GEPDPMVLIN PEIVWSSEEM NTYEEGCLSI PEMYADVERP 

       130        140        150        160        170        180 
AEVEVRWTTL EGGDASARWG GLHATCVQHE IDHLNGKLFI DYLKPLKRQM ITRKMVKLKR 


ERARAEG

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000830 Genomic DNA. Translation: ABV91928.1.
RefSeqYP_001531529.1. NC_009952.1.

3D structure databases

ProteinModelPortalA8LLB8.
ModBaseSearch...

Protein-protein interaction databases

STRINGA8LLB8.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5712104.
GenomeReviewsGene locus Dshi_0179 in contig CP000830_GR.
KEGGdsh:Dshi_0179.
PATRIC21812801. VBIDinShi9476_0176.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG665227.
OMAPEQSHEI.
ProtClustDBCLSK934098.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA8LLB8_DINSH
AccessionPrimary (citable) accession number: A8LLB8
Entry history
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: December 14, 2011
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info