A8LID3 (A8LID3_DINSH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glycoside hydrolase family 4 EMBL ABV92987.1
EC=3.2.1.22 EMBL ABV92987.1

Gene names

Name:	melA EMBL ABV92987.1
Ordered Locus Names:	Dshi_1245

Organism

Dinoroseobacter shibae (strain DFL 12) [Complete proteome] [HAMAP]

Taxonomic identifier

398580 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Dinoroseobacter

Protein attributes

Sequence length	446 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Glycosidase EMBL ABV92987.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	nucleotide binding Inferred from electronic annotation. Source: InterPro oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Inferred from electronic annotation. Source: InterPro raffinose alpha-galactosidase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8LID3 [UniParc]. Last modified December 4, 2007. Version 1. Checksum: 37E4FC85F90C27B6	FASTA	446	49,182
	10 20 30 40 50 60 MTRIAFIGAG STIFMKNILG DALHFEALRD GHFALMDIDP DRLAESAAVA RAMIATMGTG 70 80 90 100 110 120 ATISTHGERR AALEGADFVV TAFQIGGYQP CTVTDFEIPK VYGLRQTIGD TLGVGGIMRG 130 140 150 160 170 180 LRTVPHLWAV AEDMAQLCPD ATLLQYVNPM AINTWALAER FPTLRQVGLC HSVQNTVQEL 190 200 210 220 230 240 AHDLDLPPHE IRYRVAGVNH VAFFLDLTHR GRDLYPALRV GYAEGRLPKP PLLMPRCANK 250 260 270 280 290 300 VRYEVMNHLG YFCTESSEHL AEYVPWFIKN GRMDLIETYA IPLDEYPTRC LEQIADWRAQ 310 320 330 340 350 360 AEALTNAARI DVPKSHEFAA EIMNAVVTNT PYRIYGNLAN TGQTPQLPPG AAVETPCLVD 370 380 390 400 410 420 ANGVQPTTVA DIPPQLVALM RSQINVQELV VRALIDENPA HLYHAAMMDP HTAAELDLRQ 430 440 IRSLVTDLLN AHGDWIPAWA RPAKAA

References

[1]

"The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea." Wagner-Dobler I., Ballhausen B., Berger M., Brinkhoff T., Buchholz I., Bunk B., Cypionka H., Daniel R., Drepper T., Gerdts G., Hahnke S., Han C., Jahn D., Kalhoefer D., Kiss H., Klenk H.P., Kyrpides N., Liebl W. , Liesegang H., Meincke L., Pati A., Petersen J., Piekarski T., Pommerenke C., Pradella S., Pukall R., Rabus R., Stackebrandt E., Thole S., Thompson L., Tielen P., Tomasch J., von Jan M., Wanphrut N., Wichels A., Zech H., Simon M. ISME J. 4:61-77(2010) [PubMed: 19741735] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DFL 12.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000830 Genomic DNA. Translation: ABV92987.1.
RefSeq	YP_001532588.1. NC_009952.1.
3D structure databases
ProteinModelPortal	A8LID3.
ModBase	Search...
Protein-protein interaction databases
STRING	A8LID3.
Protein family/group databases
CAZy	GH4. Glycoside Hydrolase Family 4.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5711803.
GenomeReviews	Gene locus Dshi_1245 in contig CP000830_GR.
KEGG	dsh:Dshi_1245.
PATRIC	21815083. VBIDinShi9476_1294.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG511715.
OMA	MAINTWA.
ProtClustDB	PRK15076.
Family and domain databases
InterPro	IPR019802. GlycHydrolase_4_CS. IPR001088. Glyco_hydro_4. IPR022616. Glyco_hydro_4_C. IPR015955. Lactate_DH/Glyco_Ohase_4_C. IPR016040. NAD(P)-bd_dom. [Graphical view]
Gene3D	G3DSA:3.90.110.10. lact_mal_DH. 1 hit. G3DSA:3.40.50.720. NAD(P)-bd. 1 hit.
KO	K07406.
Pfam	PF02056. Glyco_hydro_4. 1 hit. PF11975. Glyco_hydro_4C. 1 hit. [Graphical view]
PRINTS	PR00732. GLHYDRLASE4.
SUPFAM	SSF56327. Lactate_DH/Glyco_hydro_4_C. 1 hit.
PROSITE	PS01324. GLYCOSYL_HYDROL_F4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A8LID3_DINSH

Accession

Primary (citable) accession number: A8LID3

Entry history

Integrated into UniProtKB/TrEMBL:	December 4, 2007
Last sequence update:	December 4, 2007
Last modified:	December 14, 2011
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)