A8LHY8 (A8LHY8_DINSH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase EMBL ABV94322.1
EC=6.5.1.1 EMBL ABV94322.1

Gene names

Ordered Locus Names:

Dshi_2589 EMBL ABV94322.1

Organism

Dinoroseobacter shibae (strain DFL 12) [Complete proteome] [HAMAP] EMBL ABV94322.1

Taxonomic identifier

398580 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhodobacterales › Rhodobacteraceae › Dinoroseobacter › Dinoroseobacter shibae

Protein attributes

Sequence length	534 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABV94322.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8LHY8 [UniParc]. Last modified December 4, 2007. Version 1. Checksum: FD761EE0EAF72232	FASTA	534	60,295
	10 20 30 40 50 60 MKDFAALFTS LDQTTKITPK VAALAAYFRT APEEDRLWTI ALLSGRRPKR TVTTTRLREW 70 80 90 100 110 120 AAERAGIPLW LFEEAYPVVG DLAETIALVL PPPTRTSTRS LTDWITTIRG LAARDEPDRR 130 140 150 160 170 180 AEILAAWDSL PETERFVFNK LITGGFRMGV SAKLMTRALS QATDIPEPEL AHRLMGDWTP 190 200 210 220 230 240 ETTSFQSLVL TRDPAADLSK PYPFYLAYGL EDPPDTLGPP ADWQAEHKWD GIRGQLILRG 250 260 270 280 290 300 GQHFVWSRGE ELMTDRFPEL AALRDFLPDG TVLDGELLAW DYNGAGDAPL PFNALQKRIG 310 320 330 340 350 360 RKTVPKKLLS EAPVILRAYD LLEDGGTDLR DRPLSERRAR LEALAAALPD TLPLRLSPTL 370 380 390 400 410 420 TFDSWDALAQ IRAKSREMGA EGIMLKRRAS PYLAGRKKGD WWKWKVDPLT IDAVMIYAQA 430 440 450 460 470 480 GHGRRANLFT DYTFAVWDGN ELVPFTKAYS GLTDAEFRQI TAWVRKNTLE RFGPVRRVTP 490 500 510 520 530 EHVFEIAFEG IQASPRHKSG VALRFPRMLR WRKDKPLQEA NTLEDLKGML EVYG

References

[1]

"The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea." Wagner-Dobler I., Ballhausen B., Berger M., Brinkhoff T., Buchholz I., Bunk B., Cypionka H., Daniel R., Drepper T., Gerdts G., Hahnke S., Han C., Jahn D., Kalhoefer D., Kiss H., Klenk H.P., Kyrpides N., Liebl W. , Liesegang H., Meincke L., Pati A., Petersen J., Piekarski T., Pommerenke C., Pradella S., Pukall R., Rabus R., Stackebrandt E., Thole S., Thompson L., Tielen P., Tomasch J., von Jan M., Wanphrut N., Wichels A., Zech H., Simon M. ISME J. 4:61-77(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DFL 12.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000830 Genomic DNA. Translation: ABV94322.1.
RefSeq	YP_001533923.1. NC_009952.1.
3D structure databases
ProteinModelPortal	A8LHY8.
ModBase	Search...
Protein-protein interaction databases
STRING	398580.Dshi_2589.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABV94322; ABV94322; Dshi_2589.
GeneID	5713487.
KEGG	dsh:Dshi_2589.
PATRIC	21817925. VBIDinShi9476_2695.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	DSHI398580:GKEL-2626-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A8LHY8_DINSH

Accession

Primary (citable) accession number: A8LHY8

Entry history

Integrated into UniProtKB/TrEMBL:	December 4, 2007
Last sequence update:	December 4, 2007
Last modified:	May 29, 2013
This is version 41 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)