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A8LHY8

- A8LHY8_DINSH

UniProt

A8LHY8 - A8LHY8_DINSH

Protein
Submitted name:

DNA ligase

Gene

Dshi_2589

Organism
Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (04 Dec 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciDSHI398580:GKEL-2626-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Ordered Locus Names:Dshi_2589Imported
    OrganismiDinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12)Imported
    Taxonomic identifieri398580 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhodobacteralesRhodobacteraceaeDinoroseobacter
    ProteomesiUP000006833: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi398580.Dshi_2589.

    Structurei

    3D structure databases

    ProteinModelPortaliA8LHY8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiNRHKSGV.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A8LHY8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKDFAALFTS LDQTTKITPK VAALAAYFRT APEEDRLWTI ALLSGRRPKR    50
    TVTTTRLREW AAERAGIPLW LFEEAYPVVG DLAETIALVL PPPTRTSTRS 100
    LTDWITTIRG LAARDEPDRR AEILAAWDSL PETERFVFNK LITGGFRMGV 150
    SAKLMTRALS QATDIPEPEL AHRLMGDWTP ETTSFQSLVL TRDPAADLSK 200
    PYPFYLAYGL EDPPDTLGPP ADWQAEHKWD GIRGQLILRG GQHFVWSRGE 250
    ELMTDRFPEL AALRDFLPDG TVLDGELLAW DYNGAGDAPL PFNALQKRIG 300
    RKTVPKKLLS EAPVILRAYD LLEDGGTDLR DRPLSERRAR LEALAAALPD 350
    TLPLRLSPTL TFDSWDALAQ IRAKSREMGA EGIMLKRRAS PYLAGRKKGD 400
    WWKWKVDPLT IDAVMIYAQA GHGRRANLFT DYTFAVWDGN ELVPFTKAYS 450
    GLTDAEFRQI TAWVRKNTLE RFGPVRRVTP EHVFEIAFEG IQASPRHKSG 500
    VALRFPRMLR WRKDKPLQEA NTLEDLKGML EVYG 534
    Length:534
    Mass (Da):60,295
    Last modified:December 4, 2007 - v1
    Checksum:iFD761EE0EAF72232
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000830 Genomic DNA. Translation: ABV94322.1.
    RefSeqiYP_001533923.1. NC_009952.1.

    Genome annotation databases

    EnsemblBacteriaiABV94322; ABV94322; Dshi_2589.
    GeneIDi5713487.
    KEGGidsh:Dshi_2589.
    PATRICi21817925. VBIDinShi9476_2695.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000830 Genomic DNA. Translation: ABV94322.1 .
    RefSeqi YP_001533923.1. NC_009952.1.

    3D structure databases

    ProteinModelPortali A8LHY8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 398580.Dshi_2589.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABV94322 ; ABV94322 ; Dshi_2589 .
    GeneIDi 5713487.
    KEGGi dsh:Dshi_2589.
    PATRICi 21817925. VBIDinShi9476_2695.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi NRHKSGV.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci DSHI398580:GKEL-2626-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 16493 / NCIMB 14021 / DFL 12Imported.

    Entry informationi

    Entry nameiA8LHY8_DINSH
    AccessioniPrimary (citable) accession number: A8LHY8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 4, 2007
    Last sequence update: December 4, 2007
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3