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A8LB06 (A8LB06_FRASN) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
30S ribosomal protein S4 1 HAMAP MF_01306
Gene names
Name:rpsD1 HAMAP MF_01306
Ordered Locus Names:Franean1_6023
OrganismFrankia sp. (strain EAN1pec) [Complete proteome] [HAMAP] EMBL ABW15367.1
Taxonomic identifier298653 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Frankineae › Frankiaceae › Frankia

Protein attributes

Sequence length209 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit By similarity. HAMAP MF_01306

With S5 and S12 plays an important role in translational accuracy By similarity. HAMAP MF_01306

Subunit structure

Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity By similarity. HAMAP MF_01306

Sequence similarities

Belongs to the ribosomal protein S4P family. HAMAP MF_01306

Contains 1 S4 RNA-binding domain. HAMAP MF_01306

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding HAMAP MF_01306
   Molecular functionRibonucleoprotein
Ribosomal protein HAMAP MF_01306
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular componentsmall ribosomal subunit

Inferred from electronic annotation. Source: InterPro

   Molecular functionrRNA binding

Inferred from electronic annotation. Source: HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain98 – 16467S4 RNA-binding By similarity HAMAP MF_01306

Sequences

Sequence LengthMass (Da)Tools
A8LB06 [UniParc].

Last modified December 4, 2007. Version 1.
Checksum: 0CCDC3D84C46F72B

FASTA20923,922
        10         20         30         40         50         60 
MARYTGADCK RCRREKTKLF LKGSKCETPK CPIEIRPYPP GEHGRGRTKD SEYLLQKREK 

        70         80         90        100        110        120 
QKCARIYGIL EKQFRGYYDE ANRRAGKTGD ELLKILESRL DNVVYRGGFA PSRDAARQAV 

       130        140        150        160        170        180 
RHGHVQVNGR KVDIPSYRVT ENDIVEIAPK SRELTPFIVA RETAGTGRTV PPWIEAIPSQ 

       190        200 
MRLLVHSLPA RQVIDTQVQE QLIVELYSK

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000820 Genomic DNA. Translation: ABW15367.1.
RefSeqYP_001510273.1. NC_009921.1.

3D structure databases

ProteinModelPortalA8LB06.
SMRA8LB06. Positions 2-209.
ModBaseSearch...

Protein-protein interaction databases

STRINGA8LB06.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5674344.
GenomeReviewsGene locus Franean1_6023 in contig CP000820_GR.
KEGGfre:Franean1_6023.
PATRIC21945557. VBIFraSp51419_6379.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG285740.
OMAQLVVELY.
ProtClustDBPRK05327.

Family and domain databases

HAMAPMF_01306_B. Ribosomal_S4_B.
[Tree]
InterProIPR022801. Ribosomal_S4/S9.
IPR001912. Ribosomal_S4/S9_N.
IPR005709. Ribosomal_S4_bac-type.
IPR002942. S4_RNA-bd.
[Graphical view]
Gene3DG3DSA:1.10.1050.10. G3DSA:1.10.1050.10. 1 hit.
G3DSA:3.10.290.10. G3DSA:3.10.290.10. 1 hit.
KOK02986.
PANTHERPTHR11831. Ribosomal_S4. 1 hit.
PfamPF00163. Ribosomal_S4. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
TIGRFAMsTIGR01017. RpsD_bact. 1 hit.
PROSITEPS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA8LB06_FRASN
AccessionPrimary (citable) accession number: A8LB06
Entry history
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info