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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Franean1_5169

Organism
Frankia sp. (strain EAN1pec)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciFSP298653:GHPI-5189-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Franean1_5169Imported
OrganismiFrankia sp. (strain EAN1pec)Imported
Taxonomic identifieri298653 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaFrankialesFrankiaceaeFrankia
ProteomesiUP000001313 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi298653.Franean1_5169.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
OMAiHERTADC.
OrthoDBiEOG63NMFT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8L0J4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MREDRRVDLP VTPPVKPMLA RAAPQIPPDM LYEPKWDGFR ALVFRDGAEL
60 70 80 90 100
EITSRNTRPM TRYFPELVEV LLAALPDRCV LDGEIVVVGP NGLDFEELSQ
110 120 130 140 150
RVHPATSRVA KLALETPVSF VAFDLLALGD EAFTDQPFAR RRAVLEEVLA
160 170 180 190 200
GHAGPAAPGT APARRIPSGV YLTPSTGELD MARQWFELYE GAGLDGLVAK
210 220 230 240 250
PPDGAYQPDK RAMFKIKHDR TADCVVAGYR PHKNDPEAVG SLLLGLYADP
260 270 280 290 300
ADEADPENAT DPARESPLLS VGVTSAFPMA RRRELVRELA HLVVPIDSHP
310 320 330 340 350
WARQGPENAA QPGGDAGEEP AAAAGQPART PWDVGESRWA RGRDLSFVPL
360 370 380 390 400
RPELVVEVRY DHMEGPRFRH TTQFVRFRPD RDPGGCTYAQ LERPVRFDIA

DVLRIPPD
Length:408
Mass (Da):45,000
Last modified:December 4, 2007 - v1
Checksum:i74858770E993E506
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000820 Genomic DNA. Translation: ABW14527.1.
RefSeqiWP_020462641.1. NC_009921.1.
YP_001509433.1. NC_009921.1.

Genome annotation databases

EnsemblBacteriaiABW14527; ABW14527; Franean1_5169.
KEGGifre:Franean1_5169.
PATRICi21943638. VBIFraSp51419_5425.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000820 Genomic DNA. Translation: ABW14527.1.
RefSeqiWP_020462641.1. NC_009921.1.
YP_001509433.1. NC_009921.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi298653.Franean1_5169.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABW14527; ABW14527; Franean1_5169.
KEGGifre:Franean1_5169.
PATRICi21943638. VBIFraSp51419_5425.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
OMAiHERTADC.
OrthoDBiEOG63NMFT.

Enzyme and pathway databases

BioCyciFSP298653:GHPI-5189-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: EAN1pecImported.

Entry informationi

Entry nameiA8L0J4_FRASN
AccessioniPrimary (citable) accession number: A8L0J4
Entry historyi
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: June 24, 2015
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.