A8JIX1 (A8JIX1_CHLRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Predicted protein EMBL EDO96179.1

Gene names

ORF Names:

CHLREDRAFT_180868 EMBL EDO96179.1

Organism

Chlamydomonas reinhardtii (Chlamydomonas smithii)

Taxonomic identifier

3055 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Chlorophyta › Chlorophyceae › Chlamydomonadales › Chlamydomonadaceae › Chlamydomonas

Protein attributes

Sequence length	1199 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 reverse transcriptase domain. RuleBase RU000322

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	DNA integration Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro RNA-dependent DNA replication Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro RNA binding Inferred from electronic annotation. Source: InterPro RNA-directed DNA polymerase activity Inferred from electronic annotation. Source: InterPro ribonuclease H activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8JIX1 [UniParc]. Last modified December 4, 2007. Version 1. Checksum: 92D58091FD20E8F3	FASTA	1,199	130,878
	10 20 30 40 50 60 MALPSTIPAI DAELKRLGLS AAQQSAYDSR LAQIEARRQL ATSTIEALPT GRRTRNSAGA 70 80 90 100 110 120 AVNRAEQVAA IEQLRDQDIA KLETAAFKQL KARMQQIQDL AARKAELAEE DDFVEVSEQD 130 140 150 160 170 180 VETAALRRPA VVRADAVSDI MQGLEKDMHL ESVLNTAPAL KEIMTAAGVT LAGSTVPAFQ 190 200 210 220 230 240 RHLQKSIRAL EKEQQEQQEL AMCSALSASE RASAALRGMA LAKQVTELIR FEQLLPDLVR 250 260 270 280 290 300 AAGGSFPAFL EAMRHPKPEV KQMLEGAALL EQIKARHRPG AAGLVAGRRR ARPRARAVQA 310 320 330 340 350 360 APATSPADAR LAETASEGSA RADAADALVH ETLAEEWLQS AAAEAAADVM RRAAALTQTQ 370 380 390 400 410 420 QQRADSSPAA QQTWFGPDGV KLRTAAWQAH GFDSAAIRNE IVWQFDVEPS PNSVRNHSSA 430 440 450 460 470 480 RQQQQQLGAH LAAMLRDGII EAYDSAEHGP ESAFATVVNP LHVVPKGDSI RPIIDPTASG 490 500 510 520 530 540 VNACMRQLPC KLPDLAELLQ HLPQYGYLGK RDLASGFHHC VLAPEARRFM AFRNPATGAL 550 560 570 580 590 600 QRYVALPFGA SQSPAIFCEL TAAATTIFQS ECDRRGLQVR IFTYCDDFMI IGQQHADVVG 610 620 630 640 650 660 AFAVMDVLGA ELGFTWKLEK DQGRDTACQQ LEFLGMMFDT VRLEMRITPD KRQRYAAAIR 670 680 690 700 710 720 ALLDAAEQGA VQRQDLESVA GKLTFVARAC RWGYTFLQSV YDALFSLQQP APRVLSLEPA 730 740 750 760 770 780 ALEDLQWWWE VLRADSSVWD GARQCTVAEL ELVRGEFADA QSGAVIFTDA SGAGFGAAWE 790 800 810 820 830 840 EAELQGVFSA QQRQSHIAWL ELTAVVRALQ TWAPRLKGRR VLVRCDNTQA VAAVNHGSTR 850 860 870 880 890 900 VKEGRSLCRQ LAELAMQAGF EVRAEHIAGV ANTRADRLSR QLAQARDQNL RLKPAVFRSL 910 920 930 940 950 960 VTTDGGQYRP TVDCCADVLG LNAQPGCAEF FSPERSVLGQ EQRLAGKVLW AFPPVSLTGE 970 980 990 1000 1010 1020 VLATIAAAAQ LDERTRATVV VPYQPSYPWF QQWASQRLAY KTLQGNISAL ADWQRSKGRS 1030 1040 1050 1060 1070 1080 GEDLISQHPL VRRTMATLQR GSGGSQQKAP LPISLLRRLI AWLAQTAGLQ PNRAEECSRD 1090 1100 1110 1120 1130 1140 ACWLALGFFG MLRRSELAGL ALADVSQQKA EGPVTLTVRR SKTDQQGLGA QVQLAATTQG 1150 1160 1170 1180 1190 SKVPIGRIVS RLRRGGATTA ANAGVPLEDI QEHGRWKSDA VRLYIKKSGL EKRRTTERM

References

[1]

"The Chlamydomonas genome reveals the evolution of key animal and plant functions." Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P. , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R. Science 318:245-250(2007) [PubMed: 17932292] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: CC-503.

Cross-references

Sequence databases
EMBL GenBank DDBJ	DS496225 Genomic DNA. Translation: EDO96179.1.
RefSeq	XP_001691170.1. XM_001691118.1.
3D structure databases
ProteinModelPortal	A8JIX1.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	EDO96179; EDO96179; CHLREDRAFT_180868.
GeneID	5716764.
KEGG	cre:CHLREDRAFT_180868.
Phylogenomic databases
ProtClustDB	CLSN2702586.
Family and domain databases
InterPro	IPR011010. DNA_brk_join_enz. IPR013762. Integrase-like_cat-core. IPR002156. RNaseH_domain. IPR000477. RVT. [Graphical view]
Gene3D	G3DSA:1.10.443.10. Phage_intgr_like. 2 hits.
Pfam	PF00078. RVT_1. 1 hit. [Graphical view]
SUPFAM	SSF56349. DNA_brk_join_enz. 1 hit.
PROSITE	PS50879. RNASE_H. 1 hit. PS50878. RT_POL. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A8JIX1_CHLRE

Accession

Primary (citable) accession number: A8JIX1

Entry history

Integrated into UniProtKB/TrEMBL:	December 4, 2007
Last sequence update:	December 4, 2007
Last modified:	December 14, 2011
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)