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A8JH25

- A8JH25_CHLRE

UniProt

A8JH25 - A8JH25_CHLRE

Protein

DNA ligase

Gene

LIG1

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 45 (01 Oct 2014)
      Sequence version 1 (04 Dec 2007)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: RefGenome

    GO - Biological processi

    1. DNA ligation Source: RefGenome
    2. DNA ligation involved in DNA repair Source: InterPro
    3. DNA recombination Source: UniProtKB-KW
    4. lagging strand elongation Source: RefGenome
    5. nucleotide-excision repair Source: RefGenome

    Keywords - Molecular functioni

    LigaseUniRule annotationImported

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    Name:LIG1Imported
    ORF Names:CHLREDRAFT_133143Imported
    OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)Imported
    Taxonomic identifieri3055 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
    ProteomesiUP000006906: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. chromosome Source: RefGenome
    2. mitochondrion Source: RefGenome
    3. nucleus Source: RefGenome

    Interactioni

    Protein-protein interaction databases

    STRINGi3055.JGI133143.

    Structurei

    3D structure databases

    ProteinModelPortaliA8JH25.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1793.
    KOiK10747.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A8JH25-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTQEPKADGG GPGTASKPAA PIASIFQRPA VRKAAAAAAA GGSPAPGNAK    50
    KSGGGAGAAA SPLKASASPA KAGKGAAPAG AATSTRDAAG GEEGKAAAAA 100
    ASPASKKDKT KARAPKVEKA GEDGEEGEEA EGRKRPRAAS SPARARRLHA 150
    HYRCAKRCTA PTAPQMEGVG TGALAAASKY KEQDISAVIS WKEGQPVPYS 200
    LLANTFEAIA GTTKRLEIVA LLVSAFRAIL ATNPPDLLPA VYLCVNRVAP 250
    AHTGIELGIG EATLIKAMCE ATGKNEASIK KSYEEHGDLG VVVVGARSTQ 300
    RTMFAPPPLT IASVLKAFQN IAQTTGTKSG DQKRGMIVKL LVAAKGNEPG 350
    YIVRSLQAKL RIGLAEQSVL VALSHAVHLH RGGPAALKQP DVKLAEALEA 400
    GAQVVKQAYS ECPSYDVLVP ALLEHGSTDL LSRCHFMPGV PVKPMLAKAT 450
    NGVGEVLEKF TDIEFTVEYK YDGERAQVHV LDGGKTVHIF SRNAENNTPK 500
    YPDIVSRIKG LLKPEVDSIV FDAEAVAYDP EKKKILPFQV LSTRARKDVA 550
    VDDIKVQVVL FAFDCLYLNG QSLLHKPLTE RRAALYGSLT EKEGELLYAS 600
    YKTSRDVEEL ESFLNESVEA GTEGLIVKTL GDTYEPSKRS SHWLKLKKDY 650
    MEGVGDTFDV VPVGAFFGKG KRTGVFGAYL LAVYDPDTET YQTISKLGTG 700
    FSEEQLSQLA EAMRPHTIPQ PRHYYTWDES LVPDVWFDAA VVWEVKAADL 750
    SISPRHKAAL GLVDPTKGIS IRFPRLIRVR DDKSPEDATS AAQVADMFRN 800
    QAVIRQQKAQ VSG 813
    Length:813
    Mass (Da):86,500
    Last modified:December 4, 2007 - v1
    Checksum:iD840085F6D52FE6D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS496188 Genomic DNA. Translation: EDO96848.1.
    RefSeqiXP_001702891.1. XM_001702839.1.
    UniGeneiCre.3193.

    Genome annotation databases

    EnsemblPlantsiEDO96848; EDO96848; CHLREDRAFT_133143.
    GeneIDi5728431.
    KEGGicre:CHLREDRAFT_133143.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS496188 Genomic DNA. Translation: EDO96848.1 .
    RefSeqi XP_001702891.1. XM_001702839.1.
    UniGenei Cre.3193.

    3D structure databases

    ProteinModelPortali A8JH25.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3055.JGI133143.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi EDO96848 ; EDO96848 ; CHLREDRAFT_133143 .
    GeneIDi 5728431.
    KEGGi cre:CHLREDRAFT_133143.

    Phylogenomic databases

    eggNOGi COG1793.
    KOi K10747.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Chlamydomonas genome reveals the evolution of key animal and plant functions."
      Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P.
      , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
      Science 318:245-250(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CC-503Imported.

    Entry informationi

    Entry nameiA8JH25_CHLRE
    AccessioniPrimary (citable) accession number: A8JH25
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 4, 2007
    Last sequence update: December 4, 2007
    Last modified: October 1, 2014
    This is version 45 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3