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A8JH25

- A8JH25_CHLRE

UniProt

A8JH25 - A8JH25_CHLRE

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Protein

DNA ligase

Gene

LIG1

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: RefGenome

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation Source: RefGenome
  3. DNA ligation involved in DNA repair Source: InterPro
  4. DNA recombination Source: UniProtKB-KW
  5. lagging strand elongation Source: RefGenome
  6. nucleotide-excision repair Source: RefGenome
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Name:LIG1Imported
ORF Names:CHLREDRAFT_133143Imported
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)Imported
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
ProteomesiUP000006906: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. chromosome Source: RefGenome
  2. mitochondrion Source: RefGenome
  3. nucleus Source: RefGenome
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi3055.JGI133143.

Structurei

3D structure databases

ProteinModelPortaliA8JH25.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG1793.
InParanoidiA8JH25.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8JH25-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTQEPKADGG GPGTASKPAA PIASIFQRPA VRKAAAAAAA GGSPAPGNAK
60 70 80 90 100
KSGGGAGAAA SPLKASASPA KAGKGAAPAG AATSTRDAAG GEEGKAAAAA
110 120 130 140 150
ASPASKKDKT KARAPKVEKA GEDGEEGEEA EGRKRPRAAS SPARARRLHA
160 170 180 190 200
HYRCAKRCTA PTAPQMEGVG TGALAAASKY KEQDISAVIS WKEGQPVPYS
210 220 230 240 250
LLANTFEAIA GTTKRLEIVA LLVSAFRAIL ATNPPDLLPA VYLCVNRVAP
260 270 280 290 300
AHTGIELGIG EATLIKAMCE ATGKNEASIK KSYEEHGDLG VVVVGARSTQ
310 320 330 340 350
RTMFAPPPLT IASVLKAFQN IAQTTGTKSG DQKRGMIVKL LVAAKGNEPG
360 370 380 390 400
YIVRSLQAKL RIGLAEQSVL VALSHAVHLH RGGPAALKQP DVKLAEALEA
410 420 430 440 450
GAQVVKQAYS ECPSYDVLVP ALLEHGSTDL LSRCHFMPGV PVKPMLAKAT
460 470 480 490 500
NGVGEVLEKF TDIEFTVEYK YDGERAQVHV LDGGKTVHIF SRNAENNTPK
510 520 530 540 550
YPDIVSRIKG LLKPEVDSIV FDAEAVAYDP EKKKILPFQV LSTRARKDVA
560 570 580 590 600
VDDIKVQVVL FAFDCLYLNG QSLLHKPLTE RRAALYGSLT EKEGELLYAS
610 620 630 640 650
YKTSRDVEEL ESFLNESVEA GTEGLIVKTL GDTYEPSKRS SHWLKLKKDY
660 670 680 690 700
MEGVGDTFDV VPVGAFFGKG KRTGVFGAYL LAVYDPDTET YQTISKLGTG
710 720 730 740 750
FSEEQLSQLA EAMRPHTIPQ PRHYYTWDES LVPDVWFDAA VVWEVKAADL
760 770 780 790 800
SISPRHKAAL GLVDPTKGIS IRFPRLIRVR DDKSPEDATS AAQVADMFRN
810
QAVIRQQKAQ VSG
Length:813
Mass (Da):86,500
Last modified:December 4, 2007 - v1
Checksum:iD840085F6D52FE6D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS496188 Genomic DNA. Translation: EDO96848.1.
RefSeqiXP_001702891.1. XM_001702839.1.
UniGeneiCre.3193.

Genome annotation databases

EnsemblPlantsiEDO96848; EDO96848; CHLREDRAFT_133143.
GeneIDi5728431.
KEGGicre:CHLREDRAFT_133143.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS496188 Genomic DNA. Translation: EDO96848.1 .
RefSeqi XP_001702891.1. XM_001702839.1.
UniGenei Cre.3193.

3D structure databases

ProteinModelPortali A8JH25.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3055.JGI133143.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi EDO96848 ; EDO96848 ; CHLREDRAFT_133143 .
GeneIDi 5728431.
KEGGi cre:CHLREDRAFT_133143.

Phylogenomic databases

eggNOGi COG1793.
InParanoidi A8JH25.
KOi K10747.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The Chlamydomonas genome reveals the evolution of key animal and plant functions."
    Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P.
    , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
    Science 318:245-250(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CC-503Imported.

Entry informationi

Entry nameiA8JH25_CHLRE
AccessioniPrimary (citable) accession number: A8JH25
Entry historyi
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: October 29, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3