Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

DNA ligase

Gene

LIG1

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) + AMP + diphosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseUniRule annotationImported
Biological processDNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation
LigandATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Name:LIG1Imported
ORF Names:CHLREDRAFT_133143Imported
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiA8JH25

Interactioni

Protein-protein interaction databases

STRINGi3055.EDO96848

Structurei

3D structure databases

ProteinModelPortaliA8JH25
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini551 – 685DNA_LIGASE_A3InterPro annotationAdd BLAST135

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiKOG0967 Eukaryota
COG1793 LUCA
InParanoidiA8JH25
KOiK10747

Family and domain databases

Gene3Di1.10.3260.10, 1 hit
InterProiView protein in InterPro
IPR000977 DNA_ligase_ATP-dep
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012308 DNA_ligase_ATP-dep_N
IPR036599 DNA_ligase_N_sf
IPR012340 NA-bd_OB-fold
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF04675 DNA_ligase_A_N, 1 hit
SUPFAMiSSF117018 SSF117018, 1 hit
SSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR00574 dnl1, 1 hit
PROSITEiView protein in PROSITE
PS00697 DNA_LIGASE_A1, 1 hit
PS00333 DNA_LIGASE_A2, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

A8JH25-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTQEPKADGG GPGTASKPAA PIASIFQRPA VRKAAAAAAA GGSPAPGNAK
60 70 80 90 100
KSGGGAGAAA SPLKASASPA KAGKGAAPAG AATSTRDAAG GEEGKAAAAA
110 120 130 140 150
ASPASKKDKT KARAPKVEKA GEDGEEGEEA EGRKRPRAAS SPARARRLHA
160 170 180 190 200
HYRCAKRCTA PTAPQMEGVG TGALAAASKY KEQDISAVIS WKEGQPVPYS
210 220 230 240 250
LLANTFEAIA GTTKRLEIVA LLVSAFRAIL ATNPPDLLPA VYLCVNRVAP
260 270 280 290 300
AHTGIELGIG EATLIKAMCE ATGKNEASIK KSYEEHGDLG VVVVGARSTQ
310 320 330 340 350
RTMFAPPPLT IASVLKAFQN IAQTTGTKSG DQKRGMIVKL LVAAKGNEPG
360 370 380 390 400
YIVRSLQAKL RIGLAEQSVL VALSHAVHLH RGGPAALKQP DVKLAEALEA
410 420 430 440 450
GAQVVKQAYS ECPSYDVLVP ALLEHGSTDL LSRCHFMPGV PVKPMLAKAT
460 470 480 490 500
NGVGEVLEKF TDIEFTVEYK YDGERAQVHV LDGGKTVHIF SRNAENNTPK
510 520 530 540 550
YPDIVSRIKG LLKPEVDSIV FDAEAVAYDP EKKKILPFQV LSTRARKDVA
560 570 580 590 600
VDDIKVQVVL FAFDCLYLNG QSLLHKPLTE RRAALYGSLT EKEGELLYAS
610 620 630 640 650
YKTSRDVEEL ESFLNESVEA GTEGLIVKTL GDTYEPSKRS SHWLKLKKDY
660 670 680 690 700
MEGVGDTFDV VPVGAFFGKG KRTGVFGAYL LAVYDPDTET YQTISKLGTG
710 720 730 740 750
FSEEQLSQLA EAMRPHTIPQ PRHYYTWDES LVPDVWFDAA VVWEVKAADL
760 770 780 790 800
SISPRHKAAL GLVDPTKGIS IRFPRLIRVR DDKSPEDATS AAQVADMFRN
810
QAVIRQQKAQ VSG
Length:813
Mass (Da):86,500
Last modified:December 4, 2007 - v1
Checksum:iD840085F6D52FE6D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496188 Genomic DNA Translation: EDO96848.1
RefSeqiXP_001702891.1, XM_001702839.1
UniGeneiCre.3193

Genome annotation databases

EnsemblPlantsiEDO96848; EDO96848; CHLREDRAFT_133143
GeneIDi5728431
GrameneiEDO96848; EDO96848; CHLREDRAFT_133143
KEGGicre:CHLREDRAFT_133143

Similar proteinsi

Entry informationi

Entry nameiA8JH25_CHLRE
AccessioniPrimary (citable) accession number: A8JH25
Entry historyiIntegrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: April 25, 2018
This is version 65 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health