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Protein

DNA ligase

Gene

LIG1

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotationImported

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
Name:LIG1Imported
ORF Names:CHLREDRAFT_133143Imported
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)Imported
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
Proteomesi
  • UP000006906 Componenti: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Proteomic databases

PaxDbiA8JH25.

Interactioni

Protein-protein interaction databases

STRINGi3055.EDO96848.

Structurei

3D structure databases

ProteinModelPortaliA8JH25.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini551 – 685135DNA_LIGASE_A3InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiKOG0967. Eukaryota.
COG1793. LUCA.
InParanoidiA8JH25.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8JH25-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTQEPKADGG GPGTASKPAA PIASIFQRPA VRKAAAAAAA GGSPAPGNAK
60 70 80 90 100
KSGGGAGAAA SPLKASASPA KAGKGAAPAG AATSTRDAAG GEEGKAAAAA
110 120 130 140 150
ASPASKKDKT KARAPKVEKA GEDGEEGEEA EGRKRPRAAS SPARARRLHA
160 170 180 190 200
HYRCAKRCTA PTAPQMEGVG TGALAAASKY KEQDISAVIS WKEGQPVPYS
210 220 230 240 250
LLANTFEAIA GTTKRLEIVA LLVSAFRAIL ATNPPDLLPA VYLCVNRVAP
260 270 280 290 300
AHTGIELGIG EATLIKAMCE ATGKNEASIK KSYEEHGDLG VVVVGARSTQ
310 320 330 340 350
RTMFAPPPLT IASVLKAFQN IAQTTGTKSG DQKRGMIVKL LVAAKGNEPG
360 370 380 390 400
YIVRSLQAKL RIGLAEQSVL VALSHAVHLH RGGPAALKQP DVKLAEALEA
410 420 430 440 450
GAQVVKQAYS ECPSYDVLVP ALLEHGSTDL LSRCHFMPGV PVKPMLAKAT
460 470 480 490 500
NGVGEVLEKF TDIEFTVEYK YDGERAQVHV LDGGKTVHIF SRNAENNTPK
510 520 530 540 550
YPDIVSRIKG LLKPEVDSIV FDAEAVAYDP EKKKILPFQV LSTRARKDVA
560 570 580 590 600
VDDIKVQVVL FAFDCLYLNG QSLLHKPLTE RRAALYGSLT EKEGELLYAS
610 620 630 640 650
YKTSRDVEEL ESFLNESVEA GTEGLIVKTL GDTYEPSKRS SHWLKLKKDY
660 670 680 690 700
MEGVGDTFDV VPVGAFFGKG KRTGVFGAYL LAVYDPDTET YQTISKLGTG
710 720 730 740 750
FSEEQLSQLA EAMRPHTIPQ PRHYYTWDES LVPDVWFDAA VVWEVKAADL
760 770 780 790 800
SISPRHKAAL GLVDPTKGIS IRFPRLIRVR DDKSPEDATS AAQVADMFRN
810
QAVIRQQKAQ VSG
Length:813
Mass (Da):86,500
Last modified:December 4, 2007 - v1
Checksum:iD840085F6D52FE6D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496188 Genomic DNA. Translation: EDO96848.1.
RefSeqiXP_001702891.1. XM_001702839.1.
UniGeneiCre.3193.

Genome annotation databases

EnsemblPlantsiEDO96848; EDO96848; CHLREDRAFT_133143.
GeneIDi5728431.
GrameneiEDO96848; EDO96848; CHLREDRAFT_133143.
KEGGicre:CHLREDRAFT_133143.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496188 Genomic DNA. Translation: EDO96848.1.
RefSeqiXP_001702891.1. XM_001702839.1.
UniGeneiCre.3193.

3D structure databases

ProteinModelPortaliA8JH25.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3055.EDO96848.

Proteomic databases

PaxDbiA8JH25.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiEDO96848; EDO96848; CHLREDRAFT_133143.
GeneIDi5728431.
GrameneiEDO96848; EDO96848; CHLREDRAFT_133143.
KEGGicre:CHLREDRAFT_133143.

Phylogenomic databases

eggNOGiKOG0967. Eukaryota.
COG1793. LUCA.
InParanoidiA8JH25.
KOiK10747.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiA8JH25_CHLRE
AccessioniPrimary (citable) accession number: A8JH25
Entry historyi
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: March 16, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.