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A8JH25 (A8JH25_CHLRE) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
Name:LIG1 EMBL EDO96848.1
ORF Names:CHLREDRAFT_133143 EMBL EDO96848.1
OrganismChlamydomonas reinhardtii (Chlamydomonas smithii) [Reference proteome]
Taxonomic identifier3055 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas

Protein attributes

Sequence length813 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
A8JH25 [UniParc].

Last modified December 4, 2007. Version 1.
Checksum: D840085F6D52FE6D

FASTA81386,500
        10         20         30         40         50         60 
MTQEPKADGG GPGTASKPAA PIASIFQRPA VRKAAAAAAA GGSPAPGNAK KSGGGAGAAA 

        70         80         90        100        110        120 
SPLKASASPA KAGKGAAPAG AATSTRDAAG GEEGKAAAAA ASPASKKDKT KARAPKVEKA 

       130        140        150        160        170        180 
GEDGEEGEEA EGRKRPRAAS SPARARRLHA HYRCAKRCTA PTAPQMEGVG TGALAAASKY 

       190        200        210        220        230        240 
KEQDISAVIS WKEGQPVPYS LLANTFEAIA GTTKRLEIVA LLVSAFRAIL ATNPPDLLPA 

       250        260        270        280        290        300 
VYLCVNRVAP AHTGIELGIG EATLIKAMCE ATGKNEASIK KSYEEHGDLG VVVVGARSTQ 

       310        320        330        340        350        360 
RTMFAPPPLT IASVLKAFQN IAQTTGTKSG DQKRGMIVKL LVAAKGNEPG YIVRSLQAKL 

       370        380        390        400        410        420 
RIGLAEQSVL VALSHAVHLH RGGPAALKQP DVKLAEALEA GAQVVKQAYS ECPSYDVLVP 

       430        440        450        460        470        480 
ALLEHGSTDL LSRCHFMPGV PVKPMLAKAT NGVGEVLEKF TDIEFTVEYK YDGERAQVHV 

       490        500        510        520        530        540 
LDGGKTVHIF SRNAENNTPK YPDIVSRIKG LLKPEVDSIV FDAEAVAYDP EKKKILPFQV 

       550        560        570        580        590        600 
LSTRARKDVA VDDIKVQVVL FAFDCLYLNG QSLLHKPLTE RRAALYGSLT EKEGELLYAS 

       610        620        630        640        650        660 
YKTSRDVEEL ESFLNESVEA GTEGLIVKTL GDTYEPSKRS SHWLKLKKDY MEGVGDTFDV 

       670        680        690        700        710        720 
VPVGAFFGKG KRTGVFGAYL LAVYDPDTET YQTISKLGTG FSEEQLSQLA EAMRPHTIPQ 

       730        740        750        760        770        780 
PRHYYTWDES LVPDVWFDAA VVWEVKAADL SISPRHKAAL GLVDPTKGIS IRFPRLIRVR 

       790        800        810 
DDKSPEDATS AAQVADMFRN QAVIRQQKAQ VSG 

« Hide

References

[1]"The Chlamydomonas genome reveals the evolution of key animal and plant functions."
Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P. expand/collapse author list , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
Science 318:245-250(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CC-503.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DS496188 Genomic DNA. Translation: EDO96848.1.
RefSeqXP_001702891.1. XM_001702839.1.
UniGeneCre.3193.

3D structure databases

ProteinModelPortalA8JH25.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3055.JGI133143.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsEDO96848; EDO96848; CHLREDRAFT_133143.
GeneID5728431.
KEGGcre:CHLREDRAFT_133143.

Phylogenomic databases

eggNOGCOG1793.
KOK10747.
ProtClustDBCLSN2924027.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA8JH25_CHLRE
AccessionPrimary (citable) accession number: A8JH25
Entry history
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: April 16, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)