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A8J8W6 (A8J8W6_CHLRE) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
SR protein factor EMBL EDO99567.1
Gene names
Name:SRP36 EMBL EDO99567.1
ORF Names:CHLREDRAFT_195847 EMBL EDO99567.1
OrganismChlamydomonas reinhardtii (Chlamydomonas smithii) [Reference proteome]
Taxonomic identifier3055 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Chlorophyta › Chlorophyceae › Chlamydomonadales › Chlamydomonadaceae › Chlamydomonas

Protein attributes

Sequence length320 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functionnucleic acid binding

Inferred from electronic annotation. Source: InterPro

nucleotide binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A8J8W6 [UniParc].

Last modified December 4, 2007. Version 1.
Checksum: A64FBC8AB9A77B30

FASTA32036,119
        10         20         30         40         50         60 
MYGGGGDRGG DRGGGGGRYG GGGGGGGGGD RYGGRAIFVG NLPYDVREKE LDEIFYKFGR 

        70         80         90        100        110        120 
IRMIDIKKPA RPPGFAFVEF EDPRSAEEAA RRRNNYEFAG MRMRVEIARG GEAAGAQQPL 

       130        140        150        160        170        180 
RIGYRPIRNT MGFRLYVKNL PRSASWQDLK DFVRRVCKPL YTEVFKDNRD NVVGVVEFES 

       190        200        210        220        230        240 
KEDMKATVRK LDDTEFANPF DKGHYVRLTE DLEERGRSRS RSRSRSRGRE RDRARDRSRS 

       250        260        270        280        290        300 
RSRSKSRSRS RSRSPKRDSK SRSRSRSPAA EGGAKSKSRS RSRTRSRSRS KSRSKSRSRS 

       310        320 
PPPADNGKEE RKEGDAPADD

« Hide

References

[1]"The Chlamydomonas genome reveals the evolution of key animal and plant functions."
Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P. expand/collapse author list , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
Science 318:245-250(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CC-503.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		DS496145 Genomic DNA. Translation: EDO99567.1.
RefSeqXP_001697982.1. XM_001697930.1.
UniGeneCre.9992.

3D structure databases

ProteinModelPortalA8J8W6.
ModBaseSearch...

Protein-protein interaction databases

STRING3055.JGI195847.
A8J8W6.

Proteomic databases

PRIDEA8J8W6.
ProMEXA8J8W6.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsEDO99567; EDO99567; CHLREDRAFT_195847.
GeneID5723614.
KEGGcre:CHLREDRAFT_195847.

Phylogenomic databases

eggNOGCOG0724.
KOK12890.
ProtClustDBCLSN2922815.

Family and domain databases

Gene3D3.30.70.330. 2 hits.
InterProIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTSM00360. RRM. 2 hits.
[Graphical view]
PROSITEPS50102. RRM. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA8J8W6_CHLRE
AccessionPrimary (citable) accession number: A8J8W6
Entry history
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: April 3, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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