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A8J6K7

- A8J6K7_CHLRE

UniProt

A8J6K7 - A8J6K7_CHLRE

Protein
Submitted name:

RNA binding protein

Gene

CHLREDRAFT_192476

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 1 (04 Dec 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. RNA binding Source: InterPro

    GO - Biological processi

    1. RNA processing Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RNA binding proteinImported
    Gene namesi
    ORF Names:CHLREDRAFT_192476Imported
    OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)Imported
    Taxonomic identifieri3055 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
    ProteomesiUP000006906: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: InterPro
    2. ribonucleoprotein complex Source: InterPro

    PTM / Processingi

    Proteomic databases

    PRIDEiA8J6K7.

    Structurei

    3D structure databases

    ProteinModelPortaliA8J6K7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK11090.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    3.30.70.330. 2 hits.
    InterProiIPR002344. Lupus_La.
    IPR006630. Lupus_La_RNA-bd.
    IPR012677. Nucleotide-bd_a/b_plait.
    IPR014886. RRM_3.
    IPR000504. RRM_dom.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF05383. La. 1 hit.
    PF08777. RRM_3. 1 hit.
    [Graphical view]
    PRINTSiPR00302. LUPUSLA.
    SMARTiSM00715. LA. 1 hit.
    SM00360. RRM. 1 hit.
    [Graphical view]
    PROSITEiPS50961. HTH_LA. 1 hit.
    PS50102. RRM. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A8J6K7-1 [UniParc]FASTAAdd to Basket

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    MGDTFTDDLK GKVVRQIEFY FSDSNLPKDK FLKERIAEDP NGFVPLNVIC    50
    AFQRMRDLIG VKSQSPDAVP ADKLQQVAEA LAGSESLEVD ESKTKVKRKQ 100
    PLAPEAEIAK AVDARSLYAR PFPMDATVDT ITELFNGHGT VNCVRMRRHV 150
    RSKMFKGSVF VEFSSVEEAE KVLAKAVEFA GATLRLQKKN DYLEGKRKAR 200
    KAAGGHNVGY ESDDSNAGQG LPDGAGGEVG GEVVESAKAK IREAPKSVDR 250
    RQGQGQKRKQ APEPAEPTFT PGCLISFTLE AELPELTGPR VISDVLGGRD 300
    KVKFVELLEG RKGGFLRFAT PELAAAALAE FEGRPEDERA IAGIKGTMTK 350
    TEGDDEVNYY KRHHIYLKAS DRGHGAGSCH PTMIIPSHSS ASAETLLHVS 400
    NAGAIPSTAM MSGAGRVKLK ATQQSPMMAF RVCK 434
    Length:434
    Mass (Da):47,078
    Last modified:December 4, 2007 - v1
    Checksum:i5A14C9F02CC26AAB
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS496139 Genomic DNA. Translation: EDP00399.1.
    RefSeqiXP_001697144.1. XM_001697092.1.
    UniGeneiCre.6160.

    Genome annotation databases

    EnsemblPlantsiEDP00399; EDP00399; CHLREDRAFT_192476.
    GeneIDi5722749.
    KEGGicre:CHLREDRAFT_192476.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS496139 Genomic DNA. Translation: EDP00399.1 .
    RefSeqi XP_001697144.1. XM_001697092.1.
    UniGenei Cre.6160.

    3D structure databases

    ProteinModelPortali A8J6K7.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi A8J6K7.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi EDP00399 ; EDP00399 ; CHLREDRAFT_192476 .
    GeneIDi 5722749.
    KEGGi cre:CHLREDRAFT_192476.

    Phylogenomic databases

    KOi K11090.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    3.30.70.330. 2 hits.
    InterProi IPR002344. Lupus_La.
    IPR006630. Lupus_La_RNA-bd.
    IPR012677. Nucleotide-bd_a/b_plait.
    IPR014886. RRM_3.
    IPR000504. RRM_dom.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF05383. La. 1 hit.
    PF08777. RRM_3. 1 hit.
    [Graphical view ]
    PRINTSi PR00302. LUPUSLA.
    SMARTi SM00715. LA. 1 hit.
    SM00360. RRM. 1 hit.
    [Graphical view ]
    PROSITEi PS50961. HTH_LA. 1 hit.
    PS50102. RRM. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Chlamydomonas genome reveals the evolution of key animal and plant functions."
      Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P.
      , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
      Science 318:245-250(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CC-503Imported.

    Entry informationi

    Entry nameiA8J6K7_CHLRE
    AccessioniPrimary (citable) accession number: A8J6K7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 4, 2007
    Last sequence update: December 4, 2007
    Last modified: October 1, 2014
    This is version 28 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3