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Protein
Submitted name:

RNA binding protein

Gene

CHLREDRAFT_192476

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA binding proteinImported
Gene namesi
ORF Names:CHLREDRAFT_192476Imported
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiA8J6K7

Interactioni

Protein-protein interaction databases

STRINGi3055.EDP00399

Structurei

3D structure databases

ProteinModelPortaliA8J6K7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 107HTH La-type RNA-bindingInterPro annotationAdd BLAST105
Domaini115 – 191RRMInterPro annotationAdd BLAST77

Phylogenomic databases

eggNOGiENOG410IQXQ Eukaryota
COG5193 LUCA
InParanoidiA8J6K7
KOiK11090

Family and domain databases

Gene3Di1.10.10.10, 1 hit
3.30.70.330, 2 hits
InterProiView protein in InterPro
IPR006630 La_HTH
IPR002344 Lupus_La
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF05383 La, 1 hit
PF00076 RRM_1, 1 hit
PRINTSiPR00302 LUPUSLA
SMARTiView protein in SMART
SM00715 LA, 1 hit
SM00360 RRM, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
SSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50961 HTH_LA, 1 hit
PS50102 RRM, 1 hit

Sequencei

Sequence statusi: Complete.

A8J6K7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGDTFTDDLK GKVVRQIEFY FSDSNLPKDK FLKERIAEDP NGFVPLNVIC
60 70 80 90 100
AFQRMRDLIG VKSQSPDAVP ADKLQQVAEA LAGSESLEVD ESKTKVKRKQ
110 120 130 140 150
PLAPEAEIAK AVDARSLYAR PFPMDATVDT ITELFNGHGT VNCVRMRRHV
160 170 180 190 200
RSKMFKGSVF VEFSSVEEAE KVLAKAVEFA GATLRLQKKN DYLEGKRKAR
210 220 230 240 250
KAAGGHNVGY ESDDSNAGQG LPDGAGGEVG GEVVESAKAK IREAPKSVDR
260 270 280 290 300
RQGQGQKRKQ APEPAEPTFT PGCLISFTLE AELPELTGPR VISDVLGGRD
310 320 330 340 350
KVKFVELLEG RKGGFLRFAT PELAAAALAE FEGRPEDERA IAGIKGTMTK
360 370 380 390 400
TEGDDEVNYY KRHHIYLKAS DRGHGAGSCH PTMIIPSHSS ASAETLLHVS
410 420 430
NAGAIPSTAM MSGAGRVKLK ATQQSPMMAF RVCK
Length:434
Mass (Da):47,078
Last modified:December 4, 2007 - v1
Checksum:i5A14C9F02CC26AAB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496139 Genomic DNA Translation: EDP00399.1
RefSeqiXP_001697144.1, XM_001697092.1
UniGeneiCre.6160

Genome annotation databases

EnsemblPlantsiEDP00399; EDP00399; CHLREDRAFT_192476
GeneIDi5722749
GrameneiEDP00399; EDP00399; CHLREDRAFT_192476
KEGGicre:CHLREDRAFT_192476

Entry informationi

Entry nameiA8J6K7_CHLRE
AccessioniPrimary (citable) accession number: A8J6K7
Entry historyiIntegrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: April 25, 2018
This is version 51 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health