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A8J6K7 (A8J6K7_CHLRE) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 27. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
ORF Names:CHLREDRAFT_192476 EMBL EDP00399.1
OrganismChlamydomonas reinhardtii (Chlamydomonas smithii) [Reference proteome]
Taxonomic identifier3055 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas

Protein attributes

Sequence length434 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processRNA processing

Inferred from electronic annotation. Source: InterPro

   Cellular_componentnucleus

Inferred from electronic annotation. Source: InterPro

ribonucleoprotein complex

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

nucleotide binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A8J6K7 [UniParc].

Last modified December 4, 2007. Version 1.
Checksum: 5A14C9F02CC26AAB

FASTA43447,078
        10         20         30         40         50         60 
MGDTFTDDLK GKVVRQIEFY FSDSNLPKDK FLKERIAEDP NGFVPLNVIC AFQRMRDLIG 

        70         80         90        100        110        120 
VKSQSPDAVP ADKLQQVAEA LAGSESLEVD ESKTKVKRKQ PLAPEAEIAK AVDARSLYAR 

       130        140        150        160        170        180 
PFPMDATVDT ITELFNGHGT VNCVRMRRHV RSKMFKGSVF VEFSSVEEAE KVLAKAVEFA 

       190        200        210        220        230        240 
GATLRLQKKN DYLEGKRKAR KAAGGHNVGY ESDDSNAGQG LPDGAGGEVG GEVVESAKAK 

       250        260        270        280        290        300 
IREAPKSVDR RQGQGQKRKQ APEPAEPTFT PGCLISFTLE AELPELTGPR VISDVLGGRD 

       310        320        330        340        350        360 
KVKFVELLEG RKGGFLRFAT PELAAAALAE FEGRPEDERA IAGIKGTMTK TEGDDEVNYY 

       370        380        390        400        410        420 
KRHHIYLKAS DRGHGAGSCH PTMIIPSHSS ASAETLLHVS NAGAIPSTAM MSGAGRVKLK 

       430 
ATQQSPMMAF RVCK 

« Hide

References

[1]"The Chlamydomonas genome reveals the evolution of key animal and plant functions."
Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P. expand/collapse author list , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
Science 318:245-250(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CC-503.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DS496139 Genomic DNA. Translation: EDP00399.1.
RefSeqXP_001697144.1. XM_001697092.1.
UniGeneCre.6160.

3D structure databases

ProteinModelPortalA8J6K7.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDEA8J6K7.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsEDP00399; EDP00399; CHLREDRAFT_192476.
GeneID5722749.
KEGGcre:CHLREDRAFT_192476.

Phylogenomic databases

KOK11090.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
3.30.70.330. 2 hits.
InterProIPR002344. Lupus_La.
IPR006630. Lupus_La_RNA-bd.
IPR012677. Nucleotide-bd_a/b_plait.
IPR014886. RRM_3.
IPR000504. RRM_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF05383. La. 1 hit.
PF08777. RRM_3. 1 hit.
[Graphical view]
PRINTSPR00302. LUPUSLA.
SMARTSM00715. LA. 1 hit.
SM00360. RRM. 1 hit.
[Graphical view]
PROSITEPS50961. HTH_LA. 1 hit.
PS50102. RRM. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA8J6K7_CHLRE
AccessionPrimary (citable) accession number: A8J6K7
Entry history
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: November 13, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)