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Protein
Submitted name:

RNA binding protein

Gene

CHLREDRAFT_192476

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. RNA binding Source: InterPro

GO - Biological processi

  1. RNA processing Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
RNA binding proteinImported
Gene namesi
ORF Names:CHLREDRAFT_192476Imported
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)Imported
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
ProteomesiUP000006906: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: InterPro
  2. ribonucleoprotein complex Source: InterPro
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiA8J6K7.

Structurei

3D structure databases

ProteinModelPortaliA8J6K7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiA8J6K7.
KOiK11090.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.70.330. 2 hits.
InterProiIPR002344. Lupus_La.
IPR006630. Lupus_La_RNA-bd.
IPR012677. Nucleotide-bd_a/b_plait.
IPR014886. RRM_3.
IPR000504. RRM_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF05383. La. 1 hit.
PF08777. RRM_3. 1 hit.
[Graphical view]
PRINTSiPR00302. LUPUSLA.
SMARTiSM00715. LA. 1 hit.
SM00360. RRM. 1 hit.
[Graphical view]
PROSITEiPS50961. HTH_LA. 1 hit.
PS50102. RRM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8J6K7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGDTFTDDLK GKVVRQIEFY FSDSNLPKDK FLKERIAEDP NGFVPLNVIC
60 70 80 90 100
AFQRMRDLIG VKSQSPDAVP ADKLQQVAEA LAGSESLEVD ESKTKVKRKQ
110 120 130 140 150
PLAPEAEIAK AVDARSLYAR PFPMDATVDT ITELFNGHGT VNCVRMRRHV
160 170 180 190 200
RSKMFKGSVF VEFSSVEEAE KVLAKAVEFA GATLRLQKKN DYLEGKRKAR
210 220 230 240 250
KAAGGHNVGY ESDDSNAGQG LPDGAGGEVG GEVVESAKAK IREAPKSVDR
260 270 280 290 300
RQGQGQKRKQ APEPAEPTFT PGCLISFTLE AELPELTGPR VISDVLGGRD
310 320 330 340 350
KVKFVELLEG RKGGFLRFAT PELAAAALAE FEGRPEDERA IAGIKGTMTK
360 370 380 390 400
TEGDDEVNYY KRHHIYLKAS DRGHGAGSCH PTMIIPSHSS ASAETLLHVS
410 420 430
NAGAIPSTAM MSGAGRVKLK ATQQSPMMAF RVCK
Length:434
Mass (Da):47,078
Last modified:December 4, 2007 - v1
Checksum:i5A14C9F02CC26AAB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496139 Genomic DNA. Translation: EDP00399.1.
RefSeqiXP_001697144.1. XM_001697092.1.
UniGeneiCre.6160.

Genome annotation databases

EnsemblPlantsiEDP00399; EDP00399; CHLREDRAFT_192476.
GeneIDi5722749.
KEGGicre:CHLREDRAFT_192476.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496139 Genomic DNA. Translation: EDP00399.1.
RefSeqiXP_001697144.1. XM_001697092.1.
UniGeneiCre.6160.

3D structure databases

ProteinModelPortaliA8J6K7.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiA8J6K7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiEDP00399; EDP00399; CHLREDRAFT_192476.
GeneIDi5722749.
KEGGicre:CHLREDRAFT_192476.

Phylogenomic databases

InParanoidiA8J6K7.
KOiK11090.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.70.330. 2 hits.
InterProiIPR002344. Lupus_La.
IPR006630. Lupus_La_RNA-bd.
IPR012677. Nucleotide-bd_a/b_plait.
IPR014886. RRM_3.
IPR000504. RRM_dom.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF05383. La. 1 hit.
PF08777. RRM_3. 1 hit.
[Graphical view]
PRINTSiPR00302. LUPUSLA.
SMARTiSM00715. LA. 1 hit.
SM00360. RRM. 1 hit.
[Graphical view]
PROSITEiPS50961. HTH_LA. 1 hit.
PS50102. RRM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The Chlamydomonas genome reveals the evolution of key animal and plant functions."
    Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P.
    , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
    Science 318:245-250(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CC-503Imported.

Entry informationi

Entry nameiA8J6K7_CHLRE
AccessioniPrimary (citable) accession number: A8J6K7
Entry historyi
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: January 7, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.