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A8J2S3

- A8J2S3_CHLRE

UniProt

A8J2S3 - A8J2S3_CHLRE

Protein
Submitted name:

RNA binding protein

Gene

CGL43

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 33 (01 Oct 2014)
      Sequence version 1 (04 Dec 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. RNA binding Source: InterPro

    GO - Biological processi

    1. response to cold Source: EnsemblPlants/Gramene

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RNA binding proteinImported
    Gene namesi
    Name:CGL43Imported
    ORF Names:CHLREDRAFT_191951Imported
    OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)Imported
    Taxonomic identifieri3055 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
    ProteomesiUP000006906: Unassembled WGS sequence

    Subcellular locationi

    GO - Cellular componenti

    1. chloroplast stroma Source: EnsemblPlants/Gramene
    2. nucleus Source: EnsemblPlants/Gramene

    PTM / Processingi

    Proteomic databases

    PRIDEiA8J2S3.
    ProMEXiA8J2S3.

    Interactioni

    Protein-protein interaction databases

    STRINGi3055.JGI191951.

    Structurei

    3D structure databases

    ProteinModelPortaliA8J2S3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0539.
    OMAiSWDLVQD.

    Family and domain databases

    Gene3Di2.40.50.140. 2 hits.
    InterProiIPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR022967. RNA-binding_domain_S1.
    [Graphical view]
    PfamiPF00575. S1. 2 hits.
    [Graphical view]
    SMARTiSM00316. S1. 2 hits.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 2 hits.
    PROSITEiPS50126. S1. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A8J2S3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQVSMRPSTC LAAQRVSTRC FKASAPAPRV VSVVAQATGK RAPADAPVPA    50
    LTRPKPASAD KQAQAQAPSQ GPSQAAISEA YIKAASSKER GETVEVKIVG 100
    QNEGGVMVQF GPLRGFMPYN KLDPARLRAC ANGDLTKLIG QQIKARIITA 150
    DIARKELVLS ERQVAAAEAL GRVSEGDVIE GVVTGVEDYG AFIQIKGLPD 200
    VFGLVHKSEV TWARILTVDE VLKLGQEVRA KVLSVDVANC RLALSIKQLT 250
    TDPLRMSLDG LDWESADVSA VSEPELKALV ESLAKSPGVT NVTVTRVAVD 300
    PQHVAQELEV YLVRTDSDGV YDAVARLGTS NTQLKLTAPE LSREQLKQML 350
    QRVAREVAQA 360
    Length:360
    Mass (Da):38,479
    Last modified:December 4, 2007 - v1
    Checksum:i2190EEA9277F3246
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS496134 Genomic DNA. Translation: EDP01473.1.
    RefSeqiXP_001695686.1. XM_001695634.1.
    UniGeneiCre.11143.

    Genome annotation databases

    EnsemblPlantsiEDP01473; EDP01473; CHLREDRAFT_191951.
    GeneIDi5721178.
    KEGGicre:CHLREDRAFT_191951.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DS496134 Genomic DNA. Translation: EDP01473.1 .
    RefSeqi XP_001695686.1. XM_001695634.1.
    UniGenei Cre.11143.

    3D structure databases

    ProteinModelPortali A8J2S3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 3055.JGI191951.

    Proteomic databases

    PRIDEi A8J2S3.
    ProMEXi A8J2S3.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi EDP01473 ; EDP01473 ; CHLREDRAFT_191951 .
    GeneIDi 5721178.
    KEGGi cre:CHLREDRAFT_191951.

    Phylogenomic databases

    eggNOGi COG0539.
    OMAi SWDLVQD.

    Family and domain databases

    Gene3Di 2.40.50.140. 2 hits.
    InterProi IPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR022967. RNA-binding_domain_S1.
    [Graphical view ]
    Pfami PF00575. S1. 2 hits.
    [Graphical view ]
    SMARTi SM00316. S1. 2 hits.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 2 hits.
    PROSITEi PS50126. S1. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The Chlamydomonas genome reveals the evolution of key animal and plant functions."
      Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P.
      , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
      Science 318:245-250(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CC-503Imported.

    Entry informationi

    Entry nameiA8J2S3_CHLRE
    AccessioniPrimary (citable) accession number: A8J2S3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 4, 2007
    Last sequence update: December 4, 2007
    Last modified: October 1, 2014
    This is version 33 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3