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A8J2S3

- A8J2S3_CHLRE

UniProt

A8J2S3 - A8J2S3_CHLRE

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Protein
Submitted name: RNA binding protein
Gene
CGL43, CHLREDRAFT_191951
Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. RNA binding Source: InterPro

GO - Biological processi

  1. response to cold Source: EnsemblPlants/Gramene
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
RNA binding proteinImported
Gene namesi
Name:CGL43Imported
ORF Names:CHLREDRAFT_191951Imported
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
ProteomesiUP000006906: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

  1. chloroplast stroma Source: EnsemblPlants/Gramene
  2. nucleus Source: EnsemblPlants/Gramene
Complete GO annotation...

PTM / Processingi

Proteomic databases

PRIDEiA8J2S3.
ProMEXiA8J2S3.

Interactioni

Protein-protein interaction databases

STRINGi3055.JGI191951.

Structurei

3D structure databases

ProteinModelPortaliA8J2S3.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0539.
OMAiSWDLVQD.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
[Graphical view]
PfamiPF00575. S1. 2 hits.
[Graphical view]
SMARTiSM00316. S1. 2 hits.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
PROSITEiPS50126. S1. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8J2S3-1 [UniParc]FASTAAdd to Basket

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MQVSMRPSTC LAAQRVSTRC FKASAPAPRV VSVVAQATGK RAPADAPVPA    50
LTRPKPASAD KQAQAQAPSQ GPSQAAISEA YIKAASSKER GETVEVKIVG 100
QNEGGVMVQF GPLRGFMPYN KLDPARLRAC ANGDLTKLIG QQIKARIITA 150
DIARKELVLS ERQVAAAEAL GRVSEGDVIE GVVTGVEDYG AFIQIKGLPD 200
VFGLVHKSEV TWARILTVDE VLKLGQEVRA KVLSVDVANC RLALSIKQLT 250
TDPLRMSLDG LDWESADVSA VSEPELKALV ESLAKSPGVT NVTVTRVAVD 300
PQHVAQELEV YLVRTDSDGV YDAVARLGTS NTQLKLTAPE LSREQLKQML 350
QRVAREVAQA 360
Length:360
Mass (Da):38,479
Last modified:December 4, 2007 - v1
Checksum:i2190EEA9277F3246
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS496134 Genomic DNA. Translation: EDP01473.1.
RefSeqiXP_001695686.1. XM_001695634.1.
UniGeneiCre.11143.

Genome annotation databases

EnsemblPlantsiEDP01473; EDP01473; CHLREDRAFT_191951.
GeneIDi5721178.
KEGGicre:CHLREDRAFT_191951.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DS496134 Genomic DNA. Translation: EDP01473.1 .
RefSeqi XP_001695686.1. XM_001695634.1.
UniGenei Cre.11143.

3D structure databases

ProteinModelPortali A8J2S3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 3055.JGI191951.

Proteomic databases

PRIDEi A8J2S3.
ProMEXi A8J2S3.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi EDP01473 ; EDP01473 ; CHLREDRAFT_191951 .
GeneIDi 5721178.
KEGGi cre:CHLREDRAFT_191951.

Phylogenomic databases

eggNOGi COG0539.
OMAi SWDLVQD.

Family and domain databases

Gene3Di 2.40.50.140. 2 hits.
InterProi IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
[Graphical view ]
Pfami PF00575. S1. 2 hits.
[Graphical view ]
SMARTi SM00316. S1. 2 hits.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 2 hits.
PROSITEi PS50126. S1. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The Chlamydomonas genome reveals the evolution of key animal and plant functions."
    Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P.
    , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
    Science 318:245-250(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CC-503.

Entry informationi

Entry nameiA8J2S3_CHLRE
AccessioniPrimary (citable) accession number: A8J2S3
Entry historyi
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: May 14, 2014
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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