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Protein
Submitted name:

RNA binding protein

Gene

CGL43

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  1. nucleic acid binding Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
RNA binding proteinImported
Gene namesi
Name:CGL43Imported
ORF Names:CHLREDRAFT_191951Imported
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)Imported
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
ProteomesiUP000006906: Unassembled WGS sequence

PTM / Processingi

Proteomic databases

PRIDEiA8J2S3.
ProMEXiA8J2S3.

Interactioni

Protein-protein interaction databases

STRINGi3055.JGI191951.

Structurei

3D structure databases

ProteinModelPortaliA8J2S3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0539.
InParanoidiA8J2S3.
OMAiGSVEDYG.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. S1_dom.
[Graphical view]
PfamiPF00575. S1. 2 hits.
[Graphical view]
SMARTiSM00316. S1. 2 hits.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
PROSITEiPS50126. S1. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8J2S3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQVSMRPSTC LAAQRVSTRC FKASAPAPRV VSVVAQATGK RAPADAPVPA
60 70 80 90 100
LTRPKPASAD KQAQAQAPSQ GPSQAAISEA YIKAASSKER GETVEVKIVG
110 120 130 140 150
QNEGGVMVQF GPLRGFMPYN KLDPARLRAC ANGDLTKLIG QQIKARIITA
160 170 180 190 200
DIARKELVLS ERQVAAAEAL GRVSEGDVIE GVVTGVEDYG AFIQIKGLPD
210 220 230 240 250
VFGLVHKSEV TWARILTVDE VLKLGQEVRA KVLSVDVANC RLALSIKQLT
260 270 280 290 300
TDPLRMSLDG LDWESADVSA VSEPELKALV ESLAKSPGVT NVTVTRVAVD
310 320 330 340 350
PQHVAQELEV YLVRTDSDGV YDAVARLGTS NTQLKLTAPE LSREQLKQML
360
QRVAREVAQA
Length:360
Mass (Da):38,479
Last modified:December 4, 2007 - v1
Checksum:i2190EEA9277F3246
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496134 Genomic DNA. Translation: EDP01473.1.
RefSeqiXP_001695686.1. XM_001695634.1.
UniGeneiCre.11143.

Genome annotation databases

EnsemblPlantsiEDP01473; EDP01473; CHLREDRAFT_191951.
GeneIDi5721178.
KEGGicre:CHLREDRAFT_191951.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496134 Genomic DNA. Translation: EDP01473.1.
RefSeqiXP_001695686.1. XM_001695634.1.
UniGeneiCre.11143.

3D structure databases

ProteinModelPortaliA8J2S3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3055.JGI191951.

Proteomic databases

PRIDEiA8J2S3.
ProMEXiA8J2S3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiEDP01473; EDP01473; CHLREDRAFT_191951.
GeneIDi5721178.
KEGGicre:CHLREDRAFT_191951.

Phylogenomic databases

eggNOGiCOG0539.
InParanoidiA8J2S3.
OMAiGSVEDYG.

Family and domain databases

Gene3Di2.40.50.140. 2 hits.
InterProiIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. S1_dom.
[Graphical view]
PfamiPF00575. S1. 2 hits.
[Graphical view]
SMARTiSM00316. S1. 2 hits.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 2 hits.
PROSITEiPS50126. S1. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The Chlamydomonas genome reveals the evolution of key animal and plant functions."
    Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P.
    , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
    Science 318:245-250(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CC-503Imported.

Entry informationi

Entry nameiA8J2S3_CHLRE
AccessioniPrimary (citable) accession number: A8J2S3
Entry historyi
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: March 4, 2015
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.