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A8J2S3 (A8J2S3_CHLRE) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 31. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:CGL43 EMBL EDP01473.1
ORF Names:CHLREDRAFT_191951 EMBL EDP01473.1
OrganismChlamydomonas reinhardtii (Chlamydomonas smithii) [Reference proteome]
Taxonomic identifier3055 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas

Protein attributes

Sequence length360 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processresponse to cold

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Cellular_componentchloroplast stroma

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

nucleus

Inferred from electronic annotation. Source: EnsemblPlants/Gramene

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A8J2S3 [UniParc].

Last modified December 4, 2007. Version 1.
Checksum: 2190EEA9277F3246

FASTA36038,479
        10         20         30         40         50         60 
MQVSMRPSTC LAAQRVSTRC FKASAPAPRV VSVVAQATGK RAPADAPVPA LTRPKPASAD 

        70         80         90        100        110        120 
KQAQAQAPSQ GPSQAAISEA YIKAASSKER GETVEVKIVG QNEGGVMVQF GPLRGFMPYN 

       130        140        150        160        170        180 
KLDPARLRAC ANGDLTKLIG QQIKARIITA DIARKELVLS ERQVAAAEAL GRVSEGDVIE 

       190        200        210        220        230        240 
GVVTGVEDYG AFIQIKGLPD VFGLVHKSEV TWARILTVDE VLKLGQEVRA KVLSVDVANC 

       250        260        270        280        290        300 
RLALSIKQLT TDPLRMSLDG LDWESADVSA VSEPELKALV ESLAKSPGVT NVTVTRVAVD 

       310        320        330        340        350        360 
PQHVAQELEV YLVRTDSDGV YDAVARLGTS NTQLKLTAPE LSREQLKQML QRVAREVAQA 

« Hide

References

[1]"The Chlamydomonas genome reveals the evolution of key animal and plant functions."
Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P. expand/collapse author list , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
Science 318:245-250(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CC-503.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DS496134 Genomic DNA. Translation: EDP01473.1.
RefSeqXP_001695686.1. XM_001695634.1.
UniGeneCre.11143.

3D structure databases

ProteinModelPortalA8J2S3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3055.JGI191951.

Proteomic databases

PRIDEA8J2S3.
ProMEXA8J2S3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsEDP01473; EDP01473; CHLREDRAFT_191951.
GeneID5721178.
KEGGcre:CHLREDRAFT_191951.

Phylogenomic databases

eggNOGCOG0539.
OMASWDLVQD.
ProtClustDBCLSN2688704.

Family and domain databases

Gene3D2.40.50.140. 2 hits.
InterProIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
[Graphical view]
PfamPF00575. S1. 2 hits.
[Graphical view]
SMARTSM00316. S1. 2 hits.
[Graphical view]
SUPFAMSSF50249. SSF50249. 2 hits.
PROSITEPS50126. S1. 2 hits.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA8J2S3_CHLRE
AccessionPrimary (citable) accession number: A8J2S3
Entry history
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: March 19, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)