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A8IK30

- A8IK30_AZOC5

UniProt

A8IK30 - A8IK30_AZOC5

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Protein
Submitted name:

Putative ATP dependent DNA ligase

Gene
AZC_0393
Organism
Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciACAU438753:GJF3-396-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:AZC_0393Imported
OrganismiAzorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)Imported
Taxonomic identifieri438753 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeAzorhizobium
ProteomesiUP000000270: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi438753.AZC_0393.

Structurei

3D structure databases

ProteinModelPortaliA8IK30.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiNRHKSGV.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8IK30-1 [UniParc]FASTAAdd to Basket

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MNRFAELLDR LSYEPRRNAK IRLMSEYFRS TPDPERGVAL AALTGKLSFT    50
NAKPGLIRAL IAERTDPVLF ELSYDYVGDL SETVALMWPA PKGLPEMGGN 100
HAPFLSEIVE GLETLPKRDL PRQLALWLDG LDETGRWALL KLITGALRVG 150
ASARLAKTAV AALGDLPPDE VELVWPGLSM PYRELFAWAE GKGERPQTTD 200
PVPFRPVMLA HAIEETDFSA LDPASFAAEW KWDGIRVQAV CARSSDGTRA 250
ARLYSRTGED ISGAFPDLVE ALDFDGALDG ELLIVREKRV ETFNVLQQRL 300
NRKAVTTKML AEFPAHIRAY DLLAVAGEDL RPLPFRDRRA RLEALIARLE 350
TQGHTRLDLS PLVPFADWEG LAAARRDPAS AGAGLDAEAV EGVMLKGWDT 400
AYLPGRPKGP WWKWKRDPHT VDAVLMYAQR GHGKRSSFYS DYTFGVWTQG 450
EEGDVLVPVG KAYFGFTDQE LIEIDKFVRR ATINRFGPVR EVLHEPDEGL 500
VLEVAFEGLA RSTRHRSGVA MRFPRIARLR WDKPPREADR LETLEALLRQ 550
EE 552
Length:552
Mass (Da):61,816
Last modified:December 4, 2007 - v1
Checksum:iC0DB76F6D3211380
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP009384 Genomic DNA. Translation: BAF86391.1.
RefSeqiYP_001523309.1. NC_009937.1.

Genome annotation databases

EnsemblBacteriaiBAF86391; BAF86391; AZC_0393.
GeneIDi5691328.
KEGGiazc:AZC_0393.
PATRICi21017253. VBIAzoCau17976_0408.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP009384 Genomic DNA. Translation: BAF86391.1 .
RefSeqi YP_001523309.1. NC_009937.1.

3D structure databases

ProteinModelPortali A8IK30.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 438753.AZC_0393.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAF86391 ; BAF86391 ; AZC_0393 .
GeneIDi 5691328.
KEGGi azc:AZC_0393.
PATRICi 21017253. VBIAzoCau17976_0408.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi NRHKSGV.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci ACAU438753:GJF3-396-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the nitrogen-fixing bacterium Azorhizobium caulinodans ORS571."
    Lee K.B., Backer P.D., Aono T., Liu C.T., Suzuki S., Suzuki T., Kaneko T., Yamada M., Tabata S., Kupfer D.M., Najar F.Z., Wiley G.B., Roe B., Binnewies T., Ussery D., Vereecke D., Gevers D., Holsters M., Oyaizu H.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43989 / DSM 5975 / ORS 571.

Entry informationi

Entry nameiA8IK30_AZOC5
AccessioniPrimary (citable) accession number: A8IK30
Entry historyi
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: May 14, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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