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Protein
Submitted name:

Putative ATP dependent DNA ligase

Gene

AZC_0393

Organism
Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciACAU438753:GJF3-396-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:AZC_0393Imported
OrganismiAzorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)Imported
Taxonomic identifieri438753 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeAzorhizobium
ProteomesiUP000000270 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi438753.AZC_0393.

Structurei

3D structure databases

ProteinModelPortaliA8IK30.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8IK30-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRFAELLDR LSYEPRRNAK IRLMSEYFRS TPDPERGVAL AALTGKLSFT
60 70 80 90 100
NAKPGLIRAL IAERTDPVLF ELSYDYVGDL SETVALMWPA PKGLPEMGGN
110 120 130 140 150
HAPFLSEIVE GLETLPKRDL PRQLALWLDG LDETGRWALL KLITGALRVG
160 170 180 190 200
ASARLAKTAV AALGDLPPDE VELVWPGLSM PYRELFAWAE GKGERPQTTD
210 220 230 240 250
PVPFRPVMLA HAIEETDFSA LDPASFAAEW KWDGIRVQAV CARSSDGTRA
260 270 280 290 300
ARLYSRTGED ISGAFPDLVE ALDFDGALDG ELLIVREKRV ETFNVLQQRL
310 320 330 340 350
NRKAVTTKML AEFPAHIRAY DLLAVAGEDL RPLPFRDRRA RLEALIARLE
360 370 380 390 400
TQGHTRLDLS PLVPFADWEG LAAARRDPAS AGAGLDAEAV EGVMLKGWDT
410 420 430 440 450
AYLPGRPKGP WWKWKRDPHT VDAVLMYAQR GHGKRSSFYS DYTFGVWTQG
460 470 480 490 500
EEGDVLVPVG KAYFGFTDQE LIEIDKFVRR ATINRFGPVR EVLHEPDEGL
510 520 530 540 550
VLEVAFEGLA RSTRHRSGVA MRFPRIARLR WDKPPREADR LETLEALLRQ

EE
Length:552
Mass (Da):61,816
Last modified:December 4, 2007 - v1
Checksum:iC0DB76F6D3211380
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009384 Genomic DNA. Translation: BAF86391.1.
RefSeqiWP_012168924.1. NC_009937.1.
YP_001523309.1. NC_009937.1.

Genome annotation databases

EnsemblBacteriaiBAF86391; BAF86391; AZC_0393.
GeneIDi5691328.
KEGGiazc:AZC_0393.
PATRICi21017253. VBIAzoCau17976_0408.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009384 Genomic DNA. Translation: BAF86391.1.
RefSeqiWP_012168924.1. NC_009937.1.
YP_001523309.1. NC_009937.1.

3D structure databases

ProteinModelPortaliA8IK30.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi438753.AZC_0393.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAF86391; BAF86391; AZC_0393.
GeneIDi5691328.
KEGGiazc:AZC_0393.
PATRICi21017253. VBIAzoCau17976_0408.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciACAU438753:GJF3-396-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the nitrogen-fixing bacterium Azorhizobium caulinodans ORS571."
    Lee K.B., Backer P.D., Aono T., Liu C.T., Suzuki S., Suzuki T., Kaneko T., Yamada M., Tabata S., Kupfer D.M., Najar F.Z., Wiley G.B., Roe B., Binnewies T., Ussery D., Vereecke D., Gevers D., Holsters M., Oyaizu H.
    Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43989 / DSM 5975 / ORS 571Imported.

Entry informationi

Entry nameiA8IK30_AZOC5
AccessioniPrimary (citable) accession number: A8IK30
Entry historyi
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: April 1, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.