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A8IK30 (A8IK30_AZOC5) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:AZC_0393 EMBL BAF86391.1
OrganismAzorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) [Complete proteome] [HAMAP] EMBL BAF86391.1
Taxonomic identifier438753 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeAzorhizobium

Protein attributes

Sequence length552 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
A8IK30 [UniParc].

Last modified December 4, 2007. Version 1.
Checksum: C0DB76F6D3211380

FASTA55261,816
        10         20         30         40         50         60 
MNRFAELLDR LSYEPRRNAK IRLMSEYFRS TPDPERGVAL AALTGKLSFT NAKPGLIRAL 

        70         80         90        100        110        120 
IAERTDPVLF ELSYDYVGDL SETVALMWPA PKGLPEMGGN HAPFLSEIVE GLETLPKRDL 

       130        140        150        160        170        180 
PRQLALWLDG LDETGRWALL KLITGALRVG ASARLAKTAV AALGDLPPDE VELVWPGLSM 

       190        200        210        220        230        240 
PYRELFAWAE GKGERPQTTD PVPFRPVMLA HAIEETDFSA LDPASFAAEW KWDGIRVQAV 

       250        260        270        280        290        300 
CARSSDGTRA ARLYSRTGED ISGAFPDLVE ALDFDGALDG ELLIVREKRV ETFNVLQQRL 

       310        320        330        340        350        360 
NRKAVTTKML AEFPAHIRAY DLLAVAGEDL RPLPFRDRRA RLEALIARLE TQGHTRLDLS 

       370        380        390        400        410        420 
PLVPFADWEG LAAARRDPAS AGAGLDAEAV EGVMLKGWDT AYLPGRPKGP WWKWKRDPHT 

       430        440        450        460        470        480 
VDAVLMYAQR GHGKRSSFYS DYTFGVWTQG EEGDVLVPVG KAYFGFTDQE LIEIDKFVRR 

       490        500        510        520        530        540 
ATINRFGPVR EVLHEPDEGL VLEVAFEGLA RSTRHRSGVA MRFPRIARLR WDKPPREADR 

       550 
LETLEALLRQ EE 

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References

[1]"Complete genome sequence of the nitrogen-fixing bacterium Azorhizobium caulinodans ORS571."
Lee K.B., Backer P.D., Aono T., Liu C.T., Suzuki S., Suzuki T., Kaneko T., Yamada M., Tabata S., Kupfer D.M., Najar F.Z., Wiley G.B., Roe B., Binnewies T., Ussery D., Vereecke D., Gevers D., Holsters M., Oyaizu H.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43989 / DSM 5975 / ORS 571.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP009384 Genomic DNA. Translation: BAF86391.1.
RefSeqYP_001523309.1. NC_009937.1.

3D structure databases

ProteinModelPortalA8IK30.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING438753.AZC_0393.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAF86391; BAF86391; AZC_0393.
GeneID5691328.
KEGGazc:AZC_0393.
PATRIC21017253. VBIAzoCau17976_0408.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMAGQPYPFF.
OrthoDBEOG6Q8HXT.
ProtClustDBCLSK979442.

Enzyme and pathway databases

BioCycACAU438753:GJF3-396-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA8IK30_AZOC5
AccessionPrimary (citable) accession number: A8IK30
Entry history
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: November 13, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)