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Protein
Submitted name:

Predicted protein

Gene

CHLREDRAFT_127955

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted proteinImported
Gene namesi
ORF Names:CHLREDRAFT_127955Imported
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)Imported
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
Proteomesi
  • UP000006906 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiA8IIS1.
ProMEXiA8IIS1.

Interactioni

Protein-protein interaction databases

STRINGi3055.EDP05821.

Structurei

3D structure databases

ProteinModelPortaliA8IIS1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini67 – 722WD_REPEATS_REGIONInterPro annotationAdd BLAST656
Repeati67 – 108WDPROSITE-ProRule annotationAdd BLAST42
Repeati109 – 142WDPROSITE-ProRule annotationAdd BLAST34
Repeati151 – 192WDPROSITE-ProRule annotationAdd BLAST42
Repeati193 – 234WDPROSITE-ProRule annotationAdd BLAST42
Repeati416 – 441WDPROSITE-ProRule annotationAdd BLAST26
Repeati498 – 530WDPROSITE-ProRule annotationAdd BLAST33
Repeati597 – 638WDPROSITE-ProRule annotationAdd BLAST42
Repeati639 – 680WDPROSITE-ProRule annotationAdd BLAST42
Repeati681 – 713WDPROSITE-ProRule annotationAdd BLAST33

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili773 – 803Sequence analysisAdd BLAST31

Keywords - Domaini

Coiled coilSequence analysis, WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG0306. Eukaryota.
ENOG410XR1C. LUCA.
InParanoidiA8IIS1.
KOiK14556.

Family and domain databases

Gene3Di2.130.10.10. 3 hits.
InterProiView protein in InterPro
IPR020472. G-protein_beta_WD-40_rep.
IPR007148. SSU_processome_Utp12.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
PfamiView protein in Pfam
PF04003. Utp12. 1 hit.
PF00400. WD40. 9 hits.
PRINTSiPR00320. GPROTEINBRPT.
SMARTiView protein in SMART
SM00320. WD40. 11 hits.
SUPFAMiSSF50978. SSF50978. 6 hits.
PROSITEiView protein in PROSITE
PS00678. WD_REPEATS_1. 2 hits.
PS50082. WD_REPEATS_2. 9 hits.
PS50294. WD_REPEATS_REGION. 1 hit.

Sequencei

Sequence statusi: Fragment.

A8IIS1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKAYLRYEF SSAFGVISSS ANPAYDASGK LLFTSALECI SVWNAKQGSL
60 70 80 90 100
VRTLSPVVAS SSGGSGSSAA VAEVTVMTCA PTGSIIAAGY SDGTVRLWDY
110 120 130 140 150
QSGDCAVTFK GHKSAVSSLR YHGGGALLAS GGRDTDVIVW DVVGETGLYR
160 170 180 190 200
LRGHKDQVTD LTFLPRQSKL VSCSKDGLVK VWDLDTQHCC QTVGGYKAEV
210 220 230 240 250
WSLDVHPEAA LLVTGATDDE IRMFAVRDPE SADAGDAEPS TAAAAGTGTG
260 270 280 290 300
AGGRDHTVLV AMGAVKRGAA SHERVALLRF SGGGGWLAVQ GAGRGLEMFR
310 320 330 340 350
VRDEDEARRK MKRRKKRRKE KSSKKEKEGK GKGKAGAAAD SDDEDDAAGA
360 370 380 390 400
GDVLEAVQLI SSKHGKIRAF AFAPPAARLP AGVACRLALA LATNQIEVVD
410 420 430 440 450
VSSESPEYAT SSRLELPGHR SDVRCLALSP DDSALLTGSS DALKLWNPRT
460 470 480 490 500
GACLATMDSG YALSVLFVPG NKFAVLGTKA GSLEVYDLGA ATRVHVEEGA
510 520 530 540 550
HGGAVWSLAA LPDKSGFVSG GADKSVKFWQ WSVVTTAGAG AEGGGRSLRL
560 570 580 590 600
AHSRTVAMAD DVLSVRVSPD GRLLAVALLD ATVKVYYADS MKFFLSLYGH
610 620 630 640 650
KLPVLCMDIS SDSTLLLTGS SDKNIKVWGL DFGDCHKSLF AHGDAIMSVA
660 670 680 690 700
WVPGTHYAFS AGKDRLLKYW DLDRFELLLE LPGHHGELWA LGVSQFGDFV
710 720 730 740 750
VTGSHDRSIR RWERTAEPFF VEEERERRLE SLFEQDLENT AADRDAAALG
760 770 780 790 800
GEGAEGGAAA PAGRRTLETV SAADSIIDAL EAAALEMDRL RQADKEAAEA
810 820 830 840 850
ERAGKPPPRP LPINAVMGGM PPSAYVLKVV SGVRASELEQ AVMLLPFADA
860 870 880 890 900
LKLLSYLPRW LEAGGPAVEL TVRLAVLLVR LHQGALQTTA AARPVMLGLQ
910 920
RRLRRAAQGL KDVVGFNMAA LGHL
Length:924
Mass (Da):97,875
Last modified:December 4, 2007 - v1
Checksum:i559E689D484579AE
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei924Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496117 Genomic DNA. Translation: EDP05821.1.
RefSeqiXP_001690562.1. XM_001690510.1.
UniGeneiCre.11270.

Genome annotation databases

EnsemblPlantsiEDP05821; EDP05821; CHLREDRAFT_127955.
GeneIDi5715972.
GrameneiEDP05821; EDP05821; CHLREDRAFT_127955.
KEGGicre:CHLREDRAFT_127955.

Similar proteinsi

Entry informationi

Entry nameiA8IIS1_CHLRE
AccessioniPrimary (citable) accession number: A8IIS1
Entry historyiIntegrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: July 5, 2017
This is version 70 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported