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A8HV36

- A8HV36_AZOC5

UniProt

A8HV36 - A8HV36_AZOC5

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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

AZC_1006

Organism
Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciACAU438753:GJF3-1020-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:AZC_1006Imported
OrganismiAzorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)Imported
Taxonomic identifieri438753 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeAzorhizobium
ProteomesiUP000000270: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi438753.AZC_1006.

Structurei

3D structure databases

ProteinModelPortaliA8HV36.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiVAFTEWT.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8HV36-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MGLSTYRAKR DFTVTPEPDG GAKGKARAAA SASAGAYVIQ KHAARRLHYD
60 70 80 90 100
LRLEMDGVLK SWAVTRGPSL VPGEKRLAVH VEDHPLAYGG FEGTIPEGQY
110 120 130 140 150
GAGKVIVWDR GSWTPVGDPH KGYKKGHLEF ALDGEKLHGR WHLVRMSPHP
160 170 180 190 200
GDKKENWLLI KVEDEAARPE GAPEITDEAP LSVVSGRDVE EVGAPSAAKS
210 220 230 240 250
PKLSTAKTSR PKAAARDAKA SEEAETTASG AERGARAVSA PAKAKKTTAA
260 270 280 290 300
RVNGRSTRAT AWDLPKGAKR APLPDFLPPA LATLARQAPK GRRYVHEIKF
310 320 330 340 350
DGYRIAARLE DGEVRLLTRT GLDWSARFGT AIREAAAALP VSDAMLDGEV
360 370 380 390 400
VVEGGNGASD FSALQADLSE GRTDRFVYYA FDLLHLDGHD LTGAPLAERK
410 420 430 440 450
ALLEQLLTRA EGSGEGVLRY SGHFEDDGAM VLQHACRLSL EGVVSKLKDA
460 470 480 490 500
PYHSGRSRDW IKSKCSERQE FVIGGFVPST TARKAIGSLV LGVYEGKRLV
510 520 530 540 550
HVGRVGTGFS NKMASDLHTL LAPEAVEESP FSARLTADEA RGVTFVAPKR
560 570 580 590 600
VAEVEFRAWT GDGHLRHAAF RGLRDDKAAA DVVREAASQP AETPKTPPKR
610 620 630 640 650
RVRLTHPDRI YWPDAGVTKE GLADYYAEVW PRIAPFIVGR PLALVRCPEG
660 670 680 690 700
IEGQHFFQKH PWKGADKALK EVHDPKAPDE PPYLAVETLD GLMALVQGAA
710 720 730 740 750
LEIHPFGAPL SDWERPDLLT MDLDPGEGVP WSAVIAAAHE VKARLETAGL
760 770 780 790 800
AAFVKTSGGK GLHVCAPLKP RADWTELKAF TKAMAETMAQ EAPDTYVATI
810 820 830 840 850
TKAKRRGRIL VDYLRNQRGS TAVAPYSARA RAGAPVSMPI AWEELGEGMG
860 870 880 890 900
PQHFTVLNAP ARLANLSADP WADFRKAAAP LPAGRTAGGT AGGKRRGGRR
Length:900
Mass (Da):97,010
Last modified:December 4, 2007 - v1
Checksum:iBF5C4DAD2A23637D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009384 Genomic DNA. Translation: BAF87004.1.
RefSeqiWP_012169537.1. NC_009937.1.
YP_001523922.1. NC_009937.1.

Genome annotation databases

EnsemblBacteriaiBAF87004; BAF87004; AZC_1006.
GeneIDi5692334.
KEGGiazc:AZC_1006.
PATRICi21018545. VBIAzoCau17976_1043.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009384 Genomic DNA. Translation: BAF87004.1 .
RefSeqi WP_012169537.1. NC_009937.1.
YP_001523922.1. NC_009937.1.

3D structure databases

ProteinModelPortali A8HV36.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 438753.AZC_1006.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAF87004 ; BAF87004 ; AZC_1006 .
GeneIDi 5692334.
KEGGi azc:AZC_1006.
PATRICi 21018545. VBIAzoCau17976_1043.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi VAFTEWT.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci ACAU438753:GJF3-1020-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the nitrogen-fixing bacterium Azorhizobium caulinodans ORS571."
    Lee K.B., Backer P.D., Aono T., Liu C.T., Suzuki S., Suzuki T., Kaneko T., Yamada M., Tabata S., Kupfer D.M., Najar F.Z., Wiley G.B., Roe B., Binnewies T., Ussery D., Vereecke D., Gevers D., Holsters M., Oyaizu H.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43989 / DSM 5975 / ORS 571Imported.

Entry informationi

Entry nameiA8HV36_AZOC5
AccessioniPrimary (citable) accession number: A8HV36
Entry historyi
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: October 29, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3