A8HV36 (A8HV36_AZOC5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL BAF87004.1

Gene names

Ordered Locus Names:

AZC_1006

Organism

Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) [Complete proteome] [HAMAP] EMBL BAF87004.1

Taxonomic identifier

438753 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Xanthobacteraceae › Azorhizobium › Azorhizobium caulinodans

Protein attributes

Sequence length	900 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL BAF87004.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8HV36 [UniParc]. Last modified December 4, 2007. Version 1. Checksum: BF5C4DAD2A23637D	FASTA	900	97,010
	10 20 30 40 50 60 MGLSTYRAKR DFTVTPEPDG GAKGKARAAA SASAGAYVIQ KHAARRLHYD LRLEMDGVLK 70 80 90 100 110 120 SWAVTRGPSL VPGEKRLAVH VEDHPLAYGG FEGTIPEGQY GAGKVIVWDR GSWTPVGDPH 130 140 150 160 170 180 KGYKKGHLEF ALDGEKLHGR WHLVRMSPHP GDKKENWLLI KVEDEAARPE GAPEITDEAP 190 200 210 220 230 240 LSVVSGRDVE EVGAPSAAKS PKLSTAKTSR PKAAARDAKA SEEAETTASG AERGARAVSA 250 260 270 280 290 300 PAKAKKTTAA RVNGRSTRAT AWDLPKGAKR APLPDFLPPA LATLARQAPK GRRYVHEIKF 310 320 330 340 350 360 DGYRIAARLE DGEVRLLTRT GLDWSARFGT AIREAAAALP VSDAMLDGEV VVEGGNGASD 370 380 390 400 410 420 FSALQADLSE GRTDRFVYYA FDLLHLDGHD LTGAPLAERK ALLEQLLTRA EGSGEGVLRY 430 440 450 460 470 480 SGHFEDDGAM VLQHACRLSL EGVVSKLKDA PYHSGRSRDW IKSKCSERQE FVIGGFVPST 490 500 510 520 530 540 TARKAIGSLV LGVYEGKRLV HVGRVGTGFS NKMASDLHTL LAPEAVEESP FSARLTADEA 550 560 570 580 590 600 RGVTFVAPKR VAEVEFRAWT GDGHLRHAAF RGLRDDKAAA DVVREAASQP AETPKTPPKR 610 620 630 640 650 660 RVRLTHPDRI YWPDAGVTKE GLADYYAEVW PRIAPFIVGR PLALVRCPEG IEGQHFFQKH 670 680 690 700 710 720 PWKGADKALK EVHDPKAPDE PPYLAVETLD GLMALVQGAA LEIHPFGAPL SDWERPDLLT 730 740 750 760 770 780 MDLDPGEGVP WSAVIAAAHE VKARLETAGL AAFVKTSGGK GLHVCAPLKP RADWTELKAF 790 800 810 820 830 840 TKAMAETMAQ EAPDTYVATI TKAKRRGRIL VDYLRNQRGS TAVAPYSARA RAGAPVSMPI 850 860 870 880 890 900 AWEELGEGMG PQHFTVLNAP ARLANLSADP WADFRKAAAP LPAGRTAGGT AGGKRRGGRR

References

[1]

"Complete genome sequence of the nitrogen-fixing bacterium Azorhizobium caulinodans ORS571." Lee K.B., Backer P.D., Aono T., Liu C.T., Suzuki S., Suzuki T., Kaneko T., Yamada M., Tabata S., Kupfer D.M., Najar F.Z., Wiley G.B., Roe B., Binnewies T., Ussery D., Vereecke D., Gevers D., Holsters M., Oyaizu H. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43989 / DSM 5975 / ORS 571.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP009384 Genomic DNA. Translation: BAF87004.1.
RefSeq	YP_001523922.1. NC_009937.1.
3D structure databases
ProteinModelPortal	A8HV36.
ModBase	Search...
Protein-protein interaction databases
STRING	438753.AZC_1006.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAF87004; BAF87004; AZC_1006.
GeneID	5692334.
KEGG	azc:AZC_1006.
PATRIC	21018545. VBIAzoCau17976_1043.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LKSDPWA.
Enzyme and pathway databases
BioCyc	ACAU438753:GJF3-1020-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A8HV36_AZOC5

Accession

Primary (citable) accession number: A8HV36

Entry history

Integrated into UniProtKB/TrEMBL:	December 4, 2007
Last sequence update:	December 4, 2007
Last modified:	May 1, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)