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A8HV36 (A8HV36_AZOC5) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:AZC_1006 EMBL BAF87004.1
OrganismAzorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) [Complete proteome] [HAMAP] EMBL BAF87004.1
Taxonomic identifier438753 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeAzorhizobium

Protein attributes

Sequence length900 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
A8HV36 [UniParc].

Last modified December 4, 2007. Version 1.
Checksum: BF5C4DAD2A23637D

FASTA90097,010
        10         20         30         40         50         60 
MGLSTYRAKR DFTVTPEPDG GAKGKARAAA SASAGAYVIQ KHAARRLHYD LRLEMDGVLK 

        70         80         90        100        110        120 
SWAVTRGPSL VPGEKRLAVH VEDHPLAYGG FEGTIPEGQY GAGKVIVWDR GSWTPVGDPH 

       130        140        150        160        170        180 
KGYKKGHLEF ALDGEKLHGR WHLVRMSPHP GDKKENWLLI KVEDEAARPE GAPEITDEAP 

       190        200        210        220        230        240 
LSVVSGRDVE EVGAPSAAKS PKLSTAKTSR PKAAARDAKA SEEAETTASG AERGARAVSA 

       250        260        270        280        290        300 
PAKAKKTTAA RVNGRSTRAT AWDLPKGAKR APLPDFLPPA LATLARQAPK GRRYVHEIKF 

       310        320        330        340        350        360 
DGYRIAARLE DGEVRLLTRT GLDWSARFGT AIREAAAALP VSDAMLDGEV VVEGGNGASD 

       370        380        390        400        410        420 
FSALQADLSE GRTDRFVYYA FDLLHLDGHD LTGAPLAERK ALLEQLLTRA EGSGEGVLRY 

       430        440        450        460        470        480 
SGHFEDDGAM VLQHACRLSL EGVVSKLKDA PYHSGRSRDW IKSKCSERQE FVIGGFVPST 

       490        500        510        520        530        540 
TARKAIGSLV LGVYEGKRLV HVGRVGTGFS NKMASDLHTL LAPEAVEESP FSARLTADEA 

       550        560        570        580        590        600 
RGVTFVAPKR VAEVEFRAWT GDGHLRHAAF RGLRDDKAAA DVVREAASQP AETPKTPPKR 

       610        620        630        640        650        660 
RVRLTHPDRI YWPDAGVTKE GLADYYAEVW PRIAPFIVGR PLALVRCPEG IEGQHFFQKH 

       670        680        690        700        710        720 
PWKGADKALK EVHDPKAPDE PPYLAVETLD GLMALVQGAA LEIHPFGAPL SDWERPDLLT 

       730        740        750        760        770        780 
MDLDPGEGVP WSAVIAAAHE VKARLETAGL AAFVKTSGGK GLHVCAPLKP RADWTELKAF 

       790        800        810        820        830        840 
TKAMAETMAQ EAPDTYVATI TKAKRRGRIL VDYLRNQRGS TAVAPYSARA RAGAPVSMPI 

       850        860        870        880        890        900 
AWEELGEGMG PQHFTVLNAP ARLANLSADP WADFRKAAAP LPAGRTAGGT AGGKRRGGRR 

« Hide

References

[1]"Complete genome sequence of the nitrogen-fixing bacterium Azorhizobium caulinodans ORS571."
Lee K.B., Backer P.D., Aono T., Liu C.T., Suzuki S., Suzuki T., Kaneko T., Yamada M., Tabata S., Kupfer D.M., Najar F.Z., Wiley G.B., Roe B., Binnewies T., Ussery D., Vereecke D., Gevers D., Holsters M., Oyaizu H.
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 43989 / DSM 5975 / ORS 571.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP009384 Genomic DNA. Translation: BAF87004.1.
RefSeqYP_001523922.1. NC_009937.1.

3D structure databases

ProteinModelPortalA8HV36.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING438753.AZC_1006.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAF87004; BAF87004; AZC_1006.
GeneID5692334.
KEGGazc:AZC_1006.
PATRIC21018545. VBIAzoCau17976_1043.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMAHPLDYAD.
OrthoDBEOG661H49.

Enzyme and pathway databases

BioCycACAU438753:GJF3-1020-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA8HV36_AZOC5
AccessionPrimary (citable) accession number: A8HV36
Entry history
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: April 16, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)