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A8HV36

- A8HV36_AZOC5

UniProt

A8HV36 - A8HV36_AZOC5

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
AZC_1006
Organism
Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciACAU438753:GJF3-1020-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:AZC_1006Imported
OrganismiAzorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)Imported
Taxonomic identifieri438753 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeAzorhizobium
ProteomesiUP000000270: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi438753.AZC_1006.

Structurei

3D structure databases

ProteinModelPortaliA8HV36.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiVAFTEWT.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8HV36-1 [UniParc]FASTAAdd to Basket

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MGLSTYRAKR DFTVTPEPDG GAKGKARAAA SASAGAYVIQ KHAARRLHYD    50
LRLEMDGVLK SWAVTRGPSL VPGEKRLAVH VEDHPLAYGG FEGTIPEGQY 100
GAGKVIVWDR GSWTPVGDPH KGYKKGHLEF ALDGEKLHGR WHLVRMSPHP 150
GDKKENWLLI KVEDEAARPE GAPEITDEAP LSVVSGRDVE EVGAPSAAKS 200
PKLSTAKTSR PKAAARDAKA SEEAETTASG AERGARAVSA PAKAKKTTAA 250
RVNGRSTRAT AWDLPKGAKR APLPDFLPPA LATLARQAPK GRRYVHEIKF 300
DGYRIAARLE DGEVRLLTRT GLDWSARFGT AIREAAAALP VSDAMLDGEV 350
VVEGGNGASD FSALQADLSE GRTDRFVYYA FDLLHLDGHD LTGAPLAERK 400
ALLEQLLTRA EGSGEGVLRY SGHFEDDGAM VLQHACRLSL EGVVSKLKDA 450
PYHSGRSRDW IKSKCSERQE FVIGGFVPST TARKAIGSLV LGVYEGKRLV 500
HVGRVGTGFS NKMASDLHTL LAPEAVEESP FSARLTADEA RGVTFVAPKR 550
VAEVEFRAWT GDGHLRHAAF RGLRDDKAAA DVVREAASQP AETPKTPPKR 600
RVRLTHPDRI YWPDAGVTKE GLADYYAEVW PRIAPFIVGR PLALVRCPEG 650
IEGQHFFQKH PWKGADKALK EVHDPKAPDE PPYLAVETLD GLMALVQGAA 700
LEIHPFGAPL SDWERPDLLT MDLDPGEGVP WSAVIAAAHE VKARLETAGL 750
AAFVKTSGGK GLHVCAPLKP RADWTELKAF TKAMAETMAQ EAPDTYVATI 800
TKAKRRGRIL VDYLRNQRGS TAVAPYSARA RAGAPVSMPI AWEELGEGMG 850
PQHFTVLNAP ARLANLSADP WADFRKAAAP LPAGRTAGGT AGGKRRGGRR 900
Length:900
Mass (Da):97,010
Last modified:December 4, 2007 - v1
Checksum:iBF5C4DAD2A23637D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP009384 Genomic DNA. Translation: BAF87004.1.
RefSeqiYP_001523922.1. NC_009937.1.

Genome annotation databases

EnsemblBacteriaiBAF87004; BAF87004; AZC_1006.
GeneIDi5692334.
KEGGiazc:AZC_1006.
PATRICi21018545. VBIAzoCau17976_1043.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP009384 Genomic DNA. Translation: BAF87004.1 .
RefSeqi YP_001523922.1. NC_009937.1.

3D structure databases

ProteinModelPortali A8HV36.
ModBasei Search...

Protein-protein interaction databases

STRINGi 438753.AZC_1006.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAF87004 ; BAF87004 ; AZC_1006 .
GeneIDi 5692334.
KEGGi azc:AZC_1006.
PATRICi 21018545. VBIAzoCau17976_1043.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi VAFTEWT.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci ACAU438753:GJF3-1020-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the nitrogen-fixing bacterium Azorhizobium caulinodans ORS571."
    Lee K.B., Backer P.D., Aono T., Liu C.T., Suzuki S., Suzuki T., Kaneko T., Yamada M., Tabata S., Kupfer D.M., Najar F.Z., Wiley G.B., Roe B., Binnewies T., Ussery D., Vereecke D., Gevers D., Holsters M., Oyaizu H.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43989 / DSM 5975 / ORS 571.

Entry informationi

Entry nameiA8HV36_AZOC5
AccessioniPrimary (citable) accession number: A8HV36
Entry historyi
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: May 14, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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