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Protein
Submitted name:

Predicted protein

Gene

CHLREDRAFT_187878

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  1. double-strand break repair via homologous recombination Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Predicted proteinImported
Gene namesi
ORF Names:CHLREDRAFT_187878Imported
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)Imported
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
ProteomesiUP000006906 Componenti: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi3055.JGI413646.

Family & Domainsi

Phylogenomic databases

eggNOGiNOG331296.
InParanoidiA8HRW3.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR015525. BRCA2.
IPR015187. BRCA2_OB_1.
IPR002093. BRCA2_repeat.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PANTHERiPTHR11289. PTHR11289. 1 hit.
PfamiPF09103. BRCA-2_OB1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50138. BRCA2_REPEAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8HRW3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAPSCRRLT LEELAPMQAA FQPLAAAFAE LPFPDSQLLE CIKLLRGPAP
60 70 80 90 100
PASEAAVTAV ANVAAVHALP AAPGGLALGV GAHDSRNGQA RSIAMVAATC
110 120 130 140 150
LDGSLVLPGT CIEASIGSQL PEPVPPSVHM IPATCLDDYD DMLMLLPPPP
160 170 180 190 200
PLESAAAEAE VDPVAVPELA GQPAVAGEDA FDYLLDEPTP PPKKLPKGTR
210 220 230 240 250
YLKPGQRAGP PRLPQPAPGA APAPVPAAPQ PALQQPLRQP QENVQRSPRA
260 270 280 290 300
GLPPASPQQP GPAQQARAWP PHSHQHYSHQ QQHPYQGLPQ PGLHRTASAS
310 320 330 340 350
RLQGPAPTQP FDPSGLATAG PTLQLHAQRR PSTAGATSAQ YQPYTGHVAT
360 370 380 390 400
APPAQPGSAP GSPLRAAGAA VTAAAAAEPG ASESEAGCPA QAAAEAVAGD
410 420 430 440 450
AGDGSGDGAA GSGEGGFSNP NSRAAQIAEQ MRQRKLGRFG KPAVQPQPKP
460 470 480 490 500
LQGPATSVSA AAGNASSSHA GDDSYGGFGS CSSFAAASSG GGGFSFANGK
510 520 530 540 550
GVQISEAARQ RSAKLFANLD PTARGHTVPV SAKALERAAA ATAKLDKDGD
560 570 580 590 600
AAAASVSARV SASAGLAPAS ASAPTSVLGA AAEFGQDLGG GMAATGFQTA
610 620 630 640 650
GGRVVAVSAQ ALKRRAEFMA KLDKDGPLFG PDAAAAAEWD DVAAKRPCPS
660 670 680 690 700
TVGGSTNSGG GNTGGGGGFS MPRAAPGTGA FKPPSRIGPS LLPQLGPAGG
710 720 730 740 750
NSGGGAAAMA VPLPTLQFAS GKAIVVSEEA RRKGPDPGAE AAAPGQSGPD
760 770 780 790 800
GQPAASGAGA ATPGLAGRGR GGAGGASPGG AAAASAACTP IAGLRGPPAS
810 820 830 840 850
VGGLRRPRPS AAGDGSAARP PRPASAPAGA GGPGAGAMPP RPGMARAGSA
860 870 880 890 900
AKRKFVSPVP AGDGAQAATA NKEEGAQLVM AAGGYTVVAP PPAQPEQAQQ
910 920 930 940 950
WGWWGAAEAQ AALQALPEAG PGALSKVARP LASEEFPAHC RHKSLTPVEL
960 970 980 990 1000
AGGARPVLAT ILAHDRSATF PMVLTVSALP NQQQQQPKLS DGWYAVPAGL
1010 1020 1030 1040 1050
DAALAQLVMA GRIRVGSKLR VCGAELASER PCDPLDGLTS GALLRLHYNG
1060 1070 1080 1090 1100
VAPGGGPVSA TLLLVASRYG VMHVAGGVHR SPRAQEERVN RALVQRGEAA
1110 1120 1130 1140 1150
SRASTAAQRA ELERCQRAAR GAPGPSVFPG YSIRVQRAYA NMVVAMLRLW
1160 1170 1180 1190 1200
RLGPEQQEGF REGHVLLVSR VQQWVFLADH TSGMCGGAGL GGGEGAGGGG
1210 1220 1230 1240 1250
GGTQPWMLAV KLIGSKEAID FIQDPQNQSG AIYSFKHLQL ITRDNANQLW
1260 1270 1280 1290 1300
VAAAPDVCSL SRVAPPPPHS AGGGGGGGGQ QPGRRSSLGG GMASGPGSGD
1310 1320 1330 1340 1350
PVQLELYGRK IDRLRGGGIR RMWVILLEVQ MGVEAHEGAA LQQPGEATGE

LTQVARV
Length:1,357
Mass (Da):135,505
Last modified:December 4, 2007 - v1
Checksum:iE4E9FE4E5C9838ED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496109 Genomic DNA. Translation: EDP08693.1.
RefSeqiXP_001693439.1. XM_001693387.1.

Genome annotation databases

EnsemblPlantsiEDP08693; EDP08693; CHLREDRAFT_187878.
GeneIDi5719065.
KEGGicre:CHLREDRAFT_187878.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496109 Genomic DNA. Translation: EDP08693.1.
RefSeqiXP_001693439.1. XM_001693387.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3055.JGI413646.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiEDP08693; EDP08693; CHLREDRAFT_187878.
GeneIDi5719065.
KEGGicre:CHLREDRAFT_187878.

Phylogenomic databases

eggNOGiNOG331296.
InParanoidiA8HRW3.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR015525. BRCA2.
IPR015187. BRCA2_OB_1.
IPR002093. BRCA2_repeat.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PANTHERiPTHR11289. PTHR11289. 1 hit.
PfamiPF09103. BRCA-2_OB1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50138. BRCA2_REPEAT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The Chlamydomonas genome reveals the evolution of key animal and plant functions."
    Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P.
    , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
    Science 318:245-250(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CC-503Imported.

Entry informationi

Entry nameiA8HRW3_CHLRE
AccessioniPrimary (citable) accession number: A8HRW3
Entry historyi
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: March 4, 2015
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.