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Protein

Coatomer subunit alpha

Gene

COPA1

Organism
Chlamydomonas reinhardtii (Chlamydomonas smithii)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processER-Golgi transportUniRule annotation, Protein transportUniRule annotation, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Coatomer subunit alphaUniRule annotation
Gene namesi
Name:COPA1Imported
ORF Names:CHLREDRAFT_195437Imported
OrganismiChlamydomonas reinhardtii (Chlamydomonas smithii)Imported
Taxonomic identifieri3055 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas
Proteomesi
  • UP000006906 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

CytoplasmUniRule annotation, Golgi apparatusUniRule annotation, MembraneUniRule annotation

PTM / Processingi

Proteomic databases

PaxDbiA8HRR9.
ProMEXiA8HRR9.

Interactioni

Subunit structurei

Oligomeric complex that consists of at least the alpha, beta, beta', gamma, delta, epsilon and zeta subunits.UniRule annotation

Protein-protein interaction databases

STRINGi3055.EDP08940.

Structurei

3D structure databases

ProteinModelPortaliA8HRR9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 286WD_REPEATS_REGIONInterPro annotationAdd BLAST282
Repeati5 – 46WDPROSITE-ProRule annotationAdd BLAST42
Repeati47 – 88WDPROSITE-ProRule annotationAdd BLAST42
Repeati89 – 130WDPROSITE-ProRule annotationAdd BLAST42
Repeati131 – 164WDPROSITE-ProRule annotationAdd BLAST34
Repeati201 – 232WDPROSITE-ProRule annotationAdd BLAST32
Repeati245 – 286WDPROSITE-ProRule annotationAdd BLAST42

Keywords - Domaini

RepeatSAAS annotation, WD repeatPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG0292. Eukaryota.
ENOG410XPZS. LUCA.
InParanoidiA8HRR9.
KOiK05236.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiView protein in InterPro
IPR024977. Apc4_WD40_dom.
IPR016391. Coatomer_asu.
IPR010714. Coatomer_asu_C.
IPR006692. Coatomer_WD-assoc_reg.
IPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom_sf.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
IPR036322. WD40_repeat_dom_sf.
PfamiView protein in Pfam
PF12894. ANAPC4_WD40. 1 hit.
PF04053. Coatomer_WDAD. 1 hit.
PF06957. COPI_C. 1 hit.
PF00400. WD40. 3 hits.
PIRSFiPIRSF003354. Coatomer_alpha_subunit. 1 hit.
PRINTSiPR00320. GPROTEINBRPT.
SMARTiView protein in SMART
SM00320. WD40. 7 hits.
SUPFAMiSSF50978. SSF50978. 2 hits.
PROSITEiView protein in PROSITE
PS00678. WD_REPEATS_1. 1 hit.
PS50082. WD_REPEATS_2. 6 hits.
PS50294. WD_REPEATS_REGION. 1 hit.

Sequencei

Sequence statusi: Complete.

A8HRR9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLTKFETKSN RVKGLSFHPK RPWVLASLHS GVVQLWDYRM GTLIDRFDEH
60 70 80 90 100
DGPVRGVHFH KSQPLFVSGG DDYKIKIWNY KLRRCLFTLL GHLDYIRTVQ
110 120 130 140 150
FHHEYPWIVS ASDDQTIRIW NWQSRTCISV LTGHNHYVMC AMFHPKEDLV
160 170 180 190 200
VSASLDQTVR VWDIGGLRKK TVAPGGEDVL RMPQMNADLF GGGDAVVKYV
210 220 230 240 250
LEGHDRGVNW AAFHPTLPLI VSGADDRQVK LWRYNGNKAW EVDTLRGHTN
260 270 280 290 300
NVSCVMFHAR QDLIISNSED KSIRVWDMSK RTGVQTFRRE HDRFWILASH
310 320 330 340 350
PEINLLAAGH DGGMIVFKLE RERPACAVHA NTLYYVKDRY LRTYDFATQR
360 370 380 390 400
DNPLMSIRRA GSAGANQACL PGNRARLPGP KTLAYNPAEN ALLITSDVDG
410 420 430 440 450
GSFELYAIPK EAARGDTAPD AKRGLGTSAV FIARNRFAVL DKSTNSIQIR
460 470 480 490 500
NLQNEITKKV PTPCATTDAI FYAGTGMLLC RSEDKVTLFD IQQRSSMADL
510 520 530 540 550
ATPFVKYVVW NNDMSMVALL SKHAIIIADK RLGGAQTVHE TIRVKSAAWD
560 570 580 590 600
DSGVLLYTTL NHLKYCLPNG DSGIIRTLDS PLYVTRVAGG IVHALDREGK
610 620 630 640 650
IRTIQVDPTE YMFKLALLQG RYDAVVNIVR SGGLCGTAII SYLQQKGFPE
660 670 680 690 700
VALHFVTDER SRFNLAVQCG NIEVALQAAQ ALDDKDTWYR LGVEALRQGN
710 720 730 740 750
YSIVEFSYQK TKSYERLSFL YLIAGHTDKL RKMLKIAEMR SDVMGRFHNA
760 770 780 790 800
LYLGDVKEQV RIMEESGQLP LAYVAAATHG LAEDAERIGS KLSCEAPEAG
810 820 830 840 850
TPGGSFLMQP PQPILREENW PLLTVSKGFF ETLAAKGAAS AAAAAGVAGA
860 870 880 890 900
VPGAAAKGRA AAAAAAAMDI DESALEGAGW GADELDLGGG EAGEEADILE
910 920 930 940 950
GMGGEGGSEG WEMEDLDLPA DVVAEAAAAA AGGAAAAFIA PAPGVPASQR
960 970 980 990 1000
WLDKRTQLAA EHAAAGSWAT AMSLMHRQLG AADFEPLKPY FMDLYSAAFG
1010 1020 1030 1040 1050
VLPGLNGVPS VMAHLDRTWS GDVSTQPPTN PTLLYTLTGL EDSLKAAYKL
1060 1070 1080 1090 1100
VTEGKFSDAL RAFTRMIHVI PLTVVESRKE VDDVKELLAI CREYHTALRC
1110 1120 1130 1140 1150
ELKRKELRDE DMARNAELAA YFTHCRLQPV HLALSLRSAM TIFFKLKNFA
1160 1170 1180 1190 1200
TCATFCRRLL ELNAGAKIAE QARTVLAACE KNPVDAVKVN YDPRNPFDLC
1210 1220 1230 1240 1250
AITFTPIYKG SKYAEDPYTG ARFTPDCKGQ ISPLGDFVRI GADASGLLIC

PSQQTR
Length:1,256
Mass (Da):138,131
Last modified:December 4, 2007 - v1
Checksum:i8D1452C3F6A28149
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DS496109 Genomic DNA. Translation: EDP08940.1.
RefSeqiXP_001693686.1. XM_001693634.1.
UniGeneiCre.8761.

Genome annotation databases

EnsemblPlantsiEDP08940; EDP08940; CHLREDRAFT_195437.
GeneIDi5719050.
GrameneiEDP08940; EDP08940; CHLREDRAFT_195437.
KEGGicre:CHLREDRAFT_195437.

Similar proteinsi

Entry informationi

Entry nameiA8HRR9_CHLRE
AccessioniPrimary (citable) accession number: A8HRR9
Entry historyiIntegrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: March 28, 2018
This is version 70 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported