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A8HP06 (A8HP06_CHLRE) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:SDH1 EMBL EDP09580.1
ORF Names:CHLREDRAFT_195972 EMBL EDP09580.1
OrganismChlamydomonas reinhardtii (Chlamydomonas smithii) [Reference proteome]
Taxonomic identifier3055 [NCBI]
Taxonomic lineageEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesChlamydomonadaceaeChlamydomonas

Protein attributes

Sequence length635 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequences

Sequence LengthMass (Da)Tools
A8HP06 [UniParc].

Last modified December 4, 2007. Version 1.
Checksum: 43DD0434281CE093

FASTA63568,880
        10         20         30         40         50         60 
MPVLAKLLGG ASKASSLQQL AGLGQRAALA ATQQAGFASQ SYPVIDHQYD AIVVGAGGAG 

        70         80         90        100        110        120 
LRAAVGLSEL GFNTACITKL FPTRSHTVAA QGGINAALGN MTEDDWRWHA YDTIKGSDWL 

       130        140        150        160        170        180 
GDQDAIHYMC REAPKAVIEL ENYGLPFSRT EDGKIYQRAF GGQSLDFGKG GQAYRCACAA 

       190        200        210        220        230        240 
DRTGHAMLHT LYGQAMKHDI QFYVEYFALD LIMDSDGVCR GVMALCMEDG TLHRFQAHQT 

       250        260        270        280        290        300 
VLATGGYGRA YFSATSAHTC TGDGNAMAAR AGIPLQDLEF VQFHPTGIYG AGCLITEGSR 

       310        320        330        340        350        360 
GEGGILRNSE GERFMERYAP TAKDLASRDV VSRSMTMEIR EGRGCGPEKD HIYLHLNHLP 

       370        380        390        400        410        420 
PELLAERLPG ISETAAIFAG VDVTKEPIPV LPTVHYNMGG VPTNYMGEVL APTPDNPDKV 

       430        440        450        460        470        480 
VPGLFAAGEA ACASVHGANR LGANSLLDIV VFGRACANRI GQIMKPNTPH KPLPATAGEG 

       490        500        510        520        530        540 
AVARLDKLRN AKGNLRTAEI RRNMQKVMQN NAAVFRTQES LEEGCKLIDE TMASFQDVKT 

       550        560        570        580        590        600 
TDRGLVWNTD LIETLELENL LINAAVTMHS AEKRKESRGA HAREDFTQRD DANWMKHTLG 

       610        620        630 
FLPSTNDKVN ISYRPVHMKP LSEEMPFIPP KPRVY 

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References

[1]"The Chlamydomonas genome reveals the evolution of key animal and plant functions."
Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L., Marshall W.F., Qu L.H., Nelson D.R., Sanderfoot A.A., Spalding M.H., Kapitonov V.V., Ren Q., Ferris P. expand/collapse author list , Lindquist E., Shapiro H., Lucas S.M., Grimwood J., Schmutz J., Cardol P., Cerutti H., Chanfreau G., Chen C.L., Cognat V., Croft M.T., Dent R., Dutcher S., Fernandez E., Fukuzawa H., Gonzalez-Ballester D., Gonzalez-Halphen D., Hallmann A., Hanikenne M., Hippler M., Inwood W., Jabbari K., Kalanon M., Kuras R., Lefebvre P.A., Lemaire S.D., Lobanov A.V., Lohr M., Manuell A., Meier I., Mets L., Mittag M., Mittelmeier T., Moroney J.V., Moseley J., Napoli C., Nedelcu A.M., Niyogi K., Novoselov S.V., Paulsen I.T., Pazour G.J., Purton S., Ral J.P., Riano-Pachon D.M., Riekhof W., Rymarquis L., Schroda M., Stern D., Umen J., Willows R., Wilson N., Zimmer S.L., Allmer J., Balk J., Bisova K., Chen C.J., Elias M., Gendler K., Hauser C., Lamb M.R., Ledford H., Long J.C., Minagawa J., Page M.D., Pan J., Pootakham W., Roje S., Rose A., Stahlberg E., Terauchi A.M., Yang P., Ball S., Bowler C., Dieckmann C.L., Gladyshev V.N., Green P., Jorgensen R., Mayfield S., Mueller-Roeber B., Rajamani S., Sayre R.T., Brokstein P., Dubchak I., Goodstein D., Hornick L., Huang Y.W., Jhaveri J., Luo Y., Martinez D., Ngau W.C., Otillar B., Poliakov A., Porter A., Szajkowski L., Werner G., Zhou K., Grigoriev I.V., Rokhsar D.S., Grossman A.R.
Science 318:245-250(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CC-503.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DS496108 Genomic DNA. Translation: EDP09580.1.
RefSeqXP_001689842.1. XM_001689790.1.
UniGeneCre.3143.

3D structure databases

ProteinModelPortalA8HP06.
SMRA8HP06. Positions 42-635.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING3055.JGI394775.

Proteomic databases

PRIDEA8HP06.
ProMEXA8HP06.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsEDP09580; EDP09580; CHLREDRAFT_195972.
GeneID5715870.
KEGGcre:CHLREDRAFT_195972.

Phylogenomic databases

eggNOGCOG1053.
KOK00234.
ProtClustDBPLN00128.

Family and domain databases

Gene3D1.20.58.100. 1 hit.
3.90.700.10. 1 hit.
InterProIPR003953. FAD_bind_dom.
IPR003952. FRD_SDH_FAD_BS.
IPR015939. Fum_Rdtase/Succ_DH_flav-like_C.
IPR027477. Succ_DH/fumarate_Rdtase_cat.
IPR011281. Succ_DH_flav_su_fwd.
IPR014006. Succ_Dhase_FrdA_Gneg.
[Graphical view]
PfamPF00890. FAD_binding_2. 1 hit.
PF02910. Succ_DH_flav_C. 1 hit.
[Graphical view]
SUPFAMSSF46977. SSF46977. 1 hit.
SSF56425. SSF56425. 1 hit.
TIGRFAMsTIGR01816. sdhA_forward. 1 hit.
TIGR01812. sdhA_frdA_Gneg. 1 hit.
PROSITEPS00504. FRD_SDH_FAD_BINDING. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA8HP06_CHLRE
AccessionPrimary (citable) accession number: A8HP06
Entry history
Integrated into UniProtKB/TrEMBL: December 4, 2007
Last sequence update: December 4, 2007
Last modified: March 19, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)