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A8GVB6

- RL23_RICB8

UniProt

A8GVB6 - RL23_RICB8

Protein

50S ribosomal protein L23

Gene

rplW

Organism
Rickettsia bellii (strain OSU 85-389)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

    GO - Molecular functioni

    1. nucleotide binding Source: InterPro
    2. rRNA binding Source: UniProtKB-HAMAP
    3. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciRBEL391896:GH75-389-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L23UniRule annotation
    Gene namesi
    Name:rplWUniRule annotation
    Ordered Locus Names:A1I_02045
    OrganismiRickettsia bellii (strain OSU 85-389)
    Taxonomic identifieri391896 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiabelli group
    ProteomesiUP000001152: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 989850S ribosomal protein L23PRO_1000068149Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

    Protein-protein interaction databases

    STRINGi391896.A1I_02045.

    Structurei

    3D structure databases

    ProteinModelPortaliA8GVB6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L23P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0089.
    HOGENOMiHOG000231366.
    KOiK02892.
    OMAiMSANLNQ.
    OrthoDBiEOG6DRPMV.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    HAMAPiMF_01369_B. Ribosomal_L23_B.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR013025. Ribosomal_L25/23.
    [Graphical view]
    PfamiPF00276. Ribosomal_L23. 1 hit.
    [Graphical view]
    SUPFAMiSSF54189. SSF54189. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A8GVB6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSSYKYYDLI RRPVITEKTT LLSEQNKYTF YVDKLAEKLA VKKAIEEIFK   50
    VKVKKVNILN VKGKKKRFKG VIGRQVDRKK AVVTLEKDHN IDFAGGIK 98
    Length:98
    Mass (Da):11,391
    Last modified:November 13, 2007 - v1
    Checksum:iA0A14E2BCFB39120
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000849 Genomic DNA. Translation: ABV78793.1.
    RefSeqiWP_011477719.1. NC_009883.1.
    YP_001495830.1. NC_009883.1.

    Genome annotation databases

    EnsemblBacteriaiABV78793; ABV78793; A1I_02045.
    GeneIDi5646852.
    KEGGirbo:A1I_02045.
    PATRICi17878706. VBIRicBel35792_0430.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000849 Genomic DNA. Translation: ABV78793.1 .
    RefSeqi WP_011477719.1. NC_009883.1.
    YP_001495830.1. NC_009883.1.

    3D structure databases

    ProteinModelPortali A8GVB6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 391896.A1I_02045.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABV78793 ; ABV78793 ; A1I_02045 .
    GeneIDi 5646852.
    KEGGi rbo:A1I_02045.
    PATRICi 17878706. VBIRicBel35792_0430.

    Phylogenomic databases

    eggNOGi COG0089.
    HOGENOMi HOG000231366.
    KOi K02892.
    OMAi MSANLNQ.
    OrthoDBi EOG6DRPMV.

    Enzyme and pathway databases

    BioCyci RBEL391896:GH75-389-MONOMER.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    HAMAPi MF_01369_B. Ribosomal_L23_B.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR012678. Ribosomal_L23/L15e_core_dom.
    IPR013025. Ribosomal_L25/23.
    [Graphical view ]
    Pfami PF00276. Ribosomal_L23. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54189. SSF54189. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequencing of Rickettsia bellii."
      Madan A., Lee H., Madan A., Yoon J.-G., Ryu G.-Y., Dasch G., Ereemeva M.
      Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: OSU 85-389.

    Entry informationi

    Entry nameiRL23_RICB8
    AccessioniPrimary (citable) accession number: A8GVB6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 5, 2008
    Last sequence update: November 13, 2007
    Last modified: October 1, 2014
    This is version 43 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome

    Documents

    1. Ribosomal proteins
      Ribosomal proteins families and list of entries
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3