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A8GKV0

- GLGB_SERP5

UniProt

A8GKV0 - GLGB_SERP5

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene
glgB, Spro_4647
Organism
Serratia proteamaculans (strain 568)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei405 – 4051Nucleophile By similarity
Active sitei458 – 4581Proton donor By similarity

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciSPRO399741:GI55-4740-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB (EC:2.4.1.18)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
Alpha-(1->4)-glucan branching enzyme
Glycogen branching enzyme
Short name:
BE
Gene namesi
Name:glgB
Ordered Locus Names:Spro_4647
OrganismiSerratia proteamaculans (strain 568)
Taxonomic identifieri399741 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSerratia
ProteomesiUP000007074: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7287281,4-alpha-glucan branching enzyme GlgBUniRule annotationPRO_1000061993Add
BLAST

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi399741.Spro_4647.

Structurei

3D structure databases

ProteinModelPortaliA8GKV0.
SMRiA8GKV0. Positions 117-728.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiECHQNNI.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

A8GKV0-1 [UniParc]FASTAAdd to Basket

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MPVLPDRDVI DQLFSGNSAD PFSLLGMHAA DNGLQVRALL PDASEVWLLE    50
QQTGRRLVQL NCDDARGFFS ATVPRRKTPF RYQFEVRWQD HQQIVDDPYR 100
FGTLLQDIDS WLLAEGTHLR PYERLGAHLS TLDDVEGVSF AVWAPNAQRV 150
SVVGEFNFWD GRRHPMRLRR ENGIWELFLP GVKAGQLYKY EIIDCYGNTQ 200
LKADPYAFEA QMRPDTASLV TPLPEVVENT PQRQRANDFD RPISIYEVHL 250
GSWRRHTDDN FWLSYGELAV QLIDYVKDMG FTHIELLPIN EHPFDGSWGY 300
QPLGLYAPTR RFGTPADFKD FVAAAHRAGI NVILDWVPGH FPSDAYGLAN 350
FDGTALYEYA DPREGFHQDW NTLIYNYGRH EVRNYLAGNA LYWLERYGID 400
ALRVDAVASM IYRDYSRAEG EWVPNYYGGN ENLEAIAFLR YTNQSVGKER 450
PGAVTLAEES TDYPGVTLPP ESNGLGFHYK WNLGWMHDTL NYMQCDPVHR 500
KYHHNQMTFG MLYAYTENFV LPISHDEVVH GKKSILDRMP GDAWQKFANL 550
RAYYGFMWAH PGKKLLFMGC EFAQGREWNF DSSLDWHLLE GLDGWHHGVQ 600
RLVRDLNHCY QQQAPLYERD YRPDGFEWLV VDDHDNSVFA FARYDAHGNE 650
LIAVSNFTPV PRHHYRIGIS RPGEYREILN TDSHHYHGSN TGNQGRVVSE 700
QIGNHGREHS ISVTVPPLAT IYLLREAQ 728
Length:728
Mass (Da):83,974
Last modified:November 13, 2007 - v1
Checksum:iE6D985C8D29312AA
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000826 Genomic DNA. Translation: ABV43740.1.
RefSeqiYP_001480868.1. NC_009832.1.

Genome annotation databases

EnsemblBacteriaiABV43740; ABV43740; Spro_4647.
GeneIDi5603141.
KEGGispe:Spro_4647.
PATRICi32422122. VBISerPro44537_4701.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000826 Genomic DNA. Translation: ABV43740.1 .
RefSeqi YP_001480868.1. NC_009832.1.

3D structure databases

ProteinModelPortali A8GKV0.
SMRi A8GKV0. Positions 117-728.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 399741.Spro_4647.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABV43740 ; ABV43740 ; Spro_4647 .
GeneIDi 5603141.
KEGGi spe:Spro_4647.
PATRICi 32422122. VBISerPro44537_4701.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi ECHQNNI.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci SPRO399741:GI55-4740-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 568.

Entry informationi

Entry nameiGLGB_SERP5
AccessioniPrimary (citable) accession number: A8GKV0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: November 13, 2007
Last modified: June 11, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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