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Protein

Outer membrane protein assembly factor BamA

Gene

bamA

Organism
Serratia proteamaculans (strain 568)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. Constitutes, with BamD, the core component of the assembly machinery.UniRule annotation

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciSPRO399741:GI55-3862-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Outer membrane protein assembly factor BamAUniRule annotation
Gene namesi
Name:bamAUniRule annotation
Synonyms:yaeT
Ordered Locus Names:Spro_3782
OrganismiSerratia proteamaculans (strain 568)
Taxonomic identifieri399741 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSerratia
Proteomesi
  • UP000007074 Componenti: Chromosome

Subcellular locationi

  • Cell outer membrane UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell outer membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2020UniRule annotationAdd
BLAST
Chaini21 – 801781Outer membrane protein assembly factor BamAPRO_5000279656Add
BLAST

Interactioni

Subunit structurei

Part of the Bam complex, which is composed of the outer membrane protein BamA, and four lipoproteins BamB, BamC, BamD and BamE.UniRule annotation

Protein-protein interaction databases

STRINGi399741.Spro_3782.

Structurei

3D structure databases

ProteinModelPortaliA8GID8.
SMRiA8GID8. Positions 21-351.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini24 – 9168POTRA 1PROSITE-ProRule annotationAdd
BLAST
Domaini92 – 17281POTRA 2PROSITE-ProRule annotationAdd
BLAST
Domaini175 – 26389POTRA 3PROSITE-ProRule annotationAdd
BLAST
Domaini266 – 34479POTRA 4PROSITE-ProRule annotationAdd
BLAST
Domaini347 – 42175POTRA 5PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the BamA family.UniRule annotation
Contains 5 POTRA domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Signal, Transmembrane, Transmembrane beta strand

Phylogenomic databases

eggNOGiENOG4105E1Z. Bacteria.
COG4775. LUCA.
HOGENOMiHOG000261766.
KOiK07277.
OMAiNLDRGYF.
OrthoDBiEOG6F81K6.

Family and domain databases

HAMAPiMF_01430. OM_assembly_BamA.
InterProiIPR000184. Bac_surfAg_D15.
IPR023707. OM_assembly_BamA.
IPR010827. Surface_Ag_variable_number.
[Graphical view]
PfamiPF01103. Bac_surface_Ag. 1 hit.
PF07244. POTRA. 4 hits.
[Graphical view]
PIRSFiPIRSF006076. OM_assembly_OMP85. 1 hit.
TIGRFAMsiTIGR03303. OM_YaeT. 1 hit.
PROSITEiPS51779. POTRA. 5 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A8GID8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAMKKLLIAS LLFGSATVYG ADGFVVKDIH FEGLQRVAVG AALLNMPVRV
60 70 80 90 100
GDTVTDDDIS NTIRALFATG NFEDVRVLRD GNTLIVQVKE RPTIASITFS
110 120 130 140 150
GNKSVKDDML KQNLEASGVR VGEALDRTTI SSIEKGLEDF YYSVGKYSAS
160 170 180 190 200
VKAVVTPLPR NRVDLKLVFT EGVSAKIQQI NIVGNHAFTN DELISRFQLR
210 220 230 240 250
DEVPWWNVVG DRKYQKQKLA GDLETLRSFY LDRGYARFNI DSTQVSLTPD
260 270 280 290 300
KKGIYITINI TEGEQYKLTD VVVNGNLAGH SAEVAQLTKI EPGELYNGSK
310 320 330 340 350
VTKMEDNIKT MLGRYGYAYP RVSTQPEIND ADKTVKLHVN IDAGNRFYVR
360 370 380 390 400
RIKFEGNDTS KDSVLRREMR QMEGAWLGNA QVEQGKERLN RLGYFETVDV
410 420 430 440 450
ETQRVPGTAD QVDVTYKVKE RNTGTFNFGV GYGTESGVSF QAGVQQDNWL
460 470 480 490 500
GTGYSVGISG TKNDYQTYTE LSVTNPYFTV DGVSLGGRIF YNDFKADDAD
510 520 530 540 550
LSDYTNKSYG IDGTLGFPIN ENNSLRTGLG YVHNGLSNMQ PQIAMWRYLD
560 570 580 590 600
SMGLNPNTTD RASYSADDFT LNLGWTYNNL DRGYFPTSGN RTTLNGKVTI
610 620 630 640 650
PGSDNEYYKL TLDSVQYVPI NDDRTWVLLG RGRLGYADGL GGKEMPFYEN
660 670 680 690 700
FYAGGSSTVR GFGSNTIGPK AAYYNSNSYG CSNGTPICNS DDAVGGNAMA
710 720 730 740 750
VASMELITPT PFISEKYANS VRTSLFMDAG TVWDTNWQNT AQTSMYDIPD
760 770 780 790 800
YSKASNIRVS AGIALQWMSP LGPLVFSYAN PIKKYEGDKS EQFQFNIGKT

W
Length:801
Mass (Da):88,725
Last modified:November 13, 2007 - v1
Checksum:i52CBD29030D03E67
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000826 Genomic DNA. Translation: ABV42878.1.
RefSeqiWP_012146487.1. NC_009832.1.

Genome annotation databases

EnsemblBacteriaiABV42878; ABV42878; Spro_3782.
KEGGispe:Spro_3782.
PATRICi32420380. VBISerPro44537_3842.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000826 Genomic DNA. Translation: ABV42878.1.
RefSeqiWP_012146487.1. NC_009832.1.

3D structure databases

ProteinModelPortaliA8GID8.
SMRiA8GID8. Positions 21-351.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi399741.Spro_3782.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABV42878; ABV42878; Spro_3782.
KEGGispe:Spro_3782.
PATRICi32420380. VBISerPro44537_3842.

Phylogenomic databases

eggNOGiENOG4105E1Z. Bacteria.
COG4775. LUCA.
HOGENOMiHOG000261766.
KOiK07277.
OMAiNLDRGYF.
OrthoDBiEOG6F81K6.

Enzyme and pathway databases

BioCyciSPRO399741:GI55-3862-MONOMER.

Family and domain databases

HAMAPiMF_01430. OM_assembly_BamA.
InterProiIPR000184. Bac_surfAg_D15.
IPR023707. OM_assembly_BamA.
IPR010827. Surface_Ag_variable_number.
[Graphical view]
PfamiPF01103. Bac_surface_Ag. 1 hit.
PF07244. POTRA. 4 hits.
[Graphical view]
PIRSFiPIRSF006076. OM_assembly_OMP85. 1 hit.
TIGRFAMsiTIGR03303. OM_YaeT. 1 hit.
PROSITEiPS51779. POTRA. 5 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 568.

Entry informationi

Entry nameiBAMA_SERP5
AccessioniPrimary (citable) accession number: A8GID8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: November 13, 2007
Last modified: December 9, 2015
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.