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A8GC96 (A8GC96_SERP5) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 54. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Deoxyribose-phosphate aldolase HAMAP-Rule MF_00114

Short name=DERA HAMAP-Rule MF_00114
EC=4.1.2.4 HAMAP-Rule MF_00114
Alternative name(s):
2-deoxy-D-ribose 5-phosphate aldolase HAMAP-Rule MF_00114
Phosphodeoxyriboaldolase HAMAP-Rule MF_00114
Gene names
Name:deoC HAMAP-Rule MF_00114
Ordered Locus Names:Spro_1632 EMBL ABV40736.1
OrganismSerratia proteamaculans (strain 568) [Complete proteome] [HAMAP] EMBL ABV40736.1
Taxonomic identifier399741 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeSerratia

Protein attributes

Sequence length226 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate By similarity. HAMAP-Rule MF_00114 SAAS SAAS011343

Catalytic activity

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. HAMAP-Rule MF_00114 SAAS SAAS011343

Pathway

Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 2/2. HAMAP-Rule MF_00114 SAAS SAAS011343

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00114 SAAS SAAS011343.

Sequence similarities

Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. HAMAP-Rule MF_00114

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1561Schiff-base intermediate with acetaldehyde By similarity HAMAP-Rule MF_00114
Active site1851 By similarity HAMAP-Rule MF_00114

Sequences

Sequence LengthMass (Da)Tools
A8GC96 [UniParc].

Last modified November 13, 2007. Version 1.
Checksum: 6DE727D9910FDE0D

FASTA22623,830
        10         20         30         40         50         60 
MTTENIDYAR YVDHTLLAMD ATEEQIAKLC EEAQQHNFYA VCVNSGYVPL AAHLLQESEV 

        70         80         90        100        110        120 
KICSVIGFPL GAGLTVTKAF EAKAAIAAGA QEIDMVINVG WLKSGLLDEV KADIAAVREV 

       130        140        150        160        170        180 
CAAIPLKVIL ETCLLSDAQI VQVCEMCREL DVAFVKTSTG FSTGGAREEH VKLMRATVGS 

       190        200        210        220 
EMGVKASGAV RDRATAEKMI KAGATRIGTS SGVAIVSGDQ AAAGSY 

« Hide

References

[1]"Complete sequence of chromosome of Serratia proteamaculans 568."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Kim E. expand/collapse author list , Taghavi S., Newman L., Vangronsveld J., van der Lelie D., Richardson P.
Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: 568 EMBL ABV40736.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000826 Genomic DNA. Translation: ABV40736.1.
RefSeqYP_001477864.1. NC_009832.1.

3D structure databases

ProteinModelPortalA8GC96.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING399741.Spro_1632.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABV40736; ABV40736; Spro_1632.
GeneID5603995.
KEGGspe:Spro_1632.
PATRIC32415954. VBISerPro44537_1662.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0274.
HOGENOMHOG000241645.
KOK01619.
OMAMNACIPP.
OrthoDBEOG6QZMW5.
ProtClustDBPRK00507.

Enzyme and pathway databases

BioCycSPRO399741:GI55-1682-MONOMER.
UniPathwayUPA00002; UER00468.

Family and domain databases

Gene3D3.20.20.70. 1 hit.
HAMAPMF_00114. DeoC_type1.
InterProIPR013785. Aldolase_TIM.
IPR011343. DeoC.
IPR002915. DeoC/FbaB/lacD_aldolase.
IPR028581. DeoC_typeI.
[Graphical view]
PANTHERPTHR10889. PTHR10889. 1 hit.
PfamPF01791. DeoC. 1 hit.
[Graphical view]
PIRSFPIRSF001357. DeoC. 1 hit.
TIGRFAMsTIGR00126. deoC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA8GC96_SERP5
AccessionPrimary (citable) accession number: A8GC96
Entry history
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: February 19, 2014
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)