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Protein
Submitted name:

Pyridoxal-dependent decarboxylase

Gene

Ssed_2780

Organism
Shewanella sediminis (strain HAW-EB3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciSSED425104:GH7Q-2878-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Pyridoxal-dependent decarboxylaseImported
Gene namesi
Ordered Locus Names:Ssed_2780Imported
OrganismiShewanella sediminis (strain HAW-EB3)Imported
Taxonomic identifieri425104 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002015 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi425104.Ssed_2780.

Structurei

3D structure databases

ProteinModelPortaliA8FX14.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiSEEAHYC.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

A8FX14-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTARQAKASE EALLRIFTIP EAPGSTLSVI EQNISQNLMG FLQESVVAVE
60 70 80 90 100
KPLTEIERDF QEHQIPAAPK FVSDYADEMM KTLVAHSVHT SAPSFIGHMT
110 120 130 140 150
SALPYFVLPL SKMMVGLNQN LVKIETSKAF TPLERQVLGM MHHLIYDENE
160 170 180 190 200
TFYNSWMHSA NVSLGAFCSG GTVANITALW TARNQLLKAD GDFKGIAAQG
210 220 230 240 250
LMKGLRHYGY NDLAILVSER GHYSLGKTAD LLGIGRENII QIPTSNDNRV
260 270 280 290 300
DVDKMRVTAK ALERDNIKVM AIVGVAGTTE TGNIDPLDKL ATLAEELDCH
310 320 330 340 350
FHVDAAWGGA SLLSKKYRHL LKGIERADSV TIDAHKQMYV PMGAGMVIFK
360 370 380 390 400
DPTFANAIKH HAEYILRKGS KDLGSQTLEG SRPGMAMLVH ACLQIIGRDG
410 420 430 440 450
YEILINNSLE KARYFAELIK TTDNFELVSE PELCLLTYRY VPESVQKAMQ
460 470 480 490 500
QARTDGDIER LLQFNRLLDG LTKFVQKRQR EQGTSFVSRT RINPEHCHDI
510 520 530 540 550
DVDLKSVVFR VVLANPLTTN EILQQVLVEQ TQIASTDKKF LPQLLELAAH
Length:550
Mass (Da):61,233
Last modified:November 13, 2007 - v1
Checksum:i4FD770E36B681AE3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000821 Genomic DNA. Translation: ABV37387.1.
RefSeqiWP_012143117.1. NC_009831.1.
YP_001474515.1. NC_009831.1.

Genome annotation databases

EnsemblBacteriaiABV37387; ABV37387; Ssed_2780.
KEGGisse:Ssed_2780.
PATRICi23563239. VBISheSed62411_2958.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000821 Genomic DNA. Translation: ABV37387.1.
RefSeqiWP_012143117.1. NC_009831.1.
YP_001474515.1. NC_009831.1.

3D structure databases

ProteinModelPortaliA8FX14.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi425104.Ssed_2780.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABV37387; ABV37387; Ssed_2780.
KEGGisse:Ssed_2780.
PATRICi23563239. VBISheSed62411_2958.

Phylogenomic databases

eggNOGiCOG0076.
HOGENOMiHOG000282553.
KOiK01580.
OMAiSEEAHYC.
OrthoDBiEOG6MSRZP.

Enzyme and pathway databases

BioCyciSSED425104:GH7Q-2878-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HAW-EB3Imported.

Entry informationi

Entry nameiA8FX14_SHESH
AccessioniPrimary (citable) accession number: A8FX14
Entry historyi
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: April 29, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.