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A8FX14 (A8FX14_SHESH) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Ssed_2780 EMBL ABV37387.1
OrganismShewanella sediminis (strain HAW-EB3) [Complete proteome] [HAMAP] EMBL ABV37387.1
Taxonomic identifier425104 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length550 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
A8FX14 [UniParc].

Last modified November 13, 2007. Version 1.
Checksum: 4FD770E36B681AE3

FASTA55061,233
        10         20         30         40         50         60 
MTARQAKASE EALLRIFTIP EAPGSTLSVI EQNISQNLMG FLQESVVAVE KPLTEIERDF 

        70         80         90        100        110        120 
QEHQIPAAPK FVSDYADEMM KTLVAHSVHT SAPSFIGHMT SALPYFVLPL SKMMVGLNQN 

       130        140        150        160        170        180 
LVKIETSKAF TPLERQVLGM MHHLIYDENE TFYNSWMHSA NVSLGAFCSG GTVANITALW 

       190        200        210        220        230        240 
TARNQLLKAD GDFKGIAAQG LMKGLRHYGY NDLAILVSER GHYSLGKTAD LLGIGRENII 

       250        260        270        280        290        300 
QIPTSNDNRV DVDKMRVTAK ALERDNIKVM AIVGVAGTTE TGNIDPLDKL ATLAEELDCH 

       310        320        330        340        350        360 
FHVDAAWGGA SLLSKKYRHL LKGIERADSV TIDAHKQMYV PMGAGMVIFK DPTFANAIKH 

       370        380        390        400        410        420 
HAEYILRKGS KDLGSQTLEG SRPGMAMLVH ACLQIIGRDG YEILINNSLE KARYFAELIK 

       430        440        450        460        470        480 
TTDNFELVSE PELCLLTYRY VPESVQKAMQ QARTDGDIER LLQFNRLLDG LTKFVQKRQR 

       490        500        510        520        530        540 
EQGTSFVSRT RINPEHCHDI DVDLKSVVFR VVLANPLTTN EILQQVLVEQ TQIASTDKKF 

       550 
LPQLLELAAH 

« Hide

References

[1]"Complete sequence of Shewanella sediminis HAW-EB3."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Zhao J.-S., Richardson P.
Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HAW-EB3 EMBL ABV37387.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000821 Genomic DNA. Translation: ABV37387.1.
RefSeqYP_001474515.1. NC_009831.1.

3D structure databases

ProteinModelPortalA8FX14.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING425104.Ssed_2780.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABV37387; ABV37387; Ssed_2780.
GeneID5613093.
KEGGsse:Ssed_2780.
PATRIC23563239. VBISheSed62411_2958.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0076.
HOGENOMHOG000282553.
KOK01580.
OMAARYFRQP.
OrthoDBEOG6MSRZP.
ProtClustDBCLSK874231.

Enzyme and pathway databases

BioCycSSED425104:GH7Q-2878-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA8FX14_SHESH
AccessionPrimary (citable) accession number: A8FX14
Entry history
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: November 13, 2013
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)