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A8FWM3 (A8FWM3_SHESH) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Ssed_2639 EMBL ABV37246.1
OrganismShewanella sediminis (strain HAW-EB3) [Complete proteome] [HAMAP] EMBL ABV37246.1
Taxonomic identifier425104 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length281 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Ontologies

Keywords
   DomainSignal EMBL ABV37246.1
   Molecular functionLigase EMBL ABV37246.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2626 Potential EMBL ABV37246.1
Chain27 – 281255 Potential EMBL ABV37246.1
PRO_5000278432

Sequences

Sequence LengthMass (Da)Tools
A8FWM3 [UniParc].

Last modified November 13, 2007. Version 1.
Checksum: 0DF4C448E44ECC24

FASTA28132,124
        10         20         30         40         50         60 
MYYSQACRLS IFLILIIFSI GLSEAHVNDI QLAVEKRAEA PISEYLVSEK LDGVRGYWDG 

        70         80         90        100        110        120 
TQLFTRSGRL ISAPQWFTRG FPDYALDGEL WMGRGTFEQI SSLIRSKHPK QERWREVKFM 

       130        140        150        160        170        180 
VFDLPSHSQV FTERYAIAKN ELANNSIYLS VIEQKRFDSV QALDTWFSRV IEQGGEGLML 

       190        200        210        220        230        240 
HHNQSLYLSG RNRDVIKLKP LYDAEARVVA HQEGQGKFNG MLGALVVETP SGIRFKLGTG 

       250        260        270        280 
FTVSERRHPP KIGSIVTYQY SGLTQKGTPR FASFLRVRFM E 

« Hide

References

[1]"Complete sequence of Shewanella sediminis HAW-EB3."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Zhao J.-S., Richardson P.
Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HAW-EB3 EMBL ABV37246.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000821 Genomic DNA. Translation: ABV37246.1.
RefSeqYP_001474374.1. NC_009831.1.

3D structure databases

ProteinModelPortalA8FWM3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING425104.Ssed_2639.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABV37246; ABV37246; Ssed_2639.
GeneID5613096.
KEGGsse:Ssed_2639.
PATRIC23562947. VBISheSed62411_2812.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMAGKGQFEN.
OrthoDBEOG60919Q.

Enzyme and pathway databases

BioCycSSED425104:GH7Q-2737-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA8FWM3_SHESH
AccessionPrimary (citable) accession number: A8FWM3
Entry history
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: June 11, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)