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A8FWM3

- A8FWM3_SHESH

UniProt

A8FWM3 - A8FWM3_SHESH

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Protein
Submitted name:

ATP dependent DNA ligase

Gene
Ssed_2639
Organism
Shewanella sediminis (strain HAW-EB3)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSSED425104:GH7Q-2737-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Ssed_2639Imported
OrganismiShewanella sediminis (strain HAW-EB3)Imported
Taxonomic identifieri425104 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002015: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2626 PredictedImportedAdd
BLAST
Chaini27 – 281255 PredictedImportedPRO_5000278432Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi425104.Ssed_2639.

Structurei

3D structure databases

ProteinModelPortaliA8FWM3.

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK01971.
OMAiGKGQFEN.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A8FWM3-1 [UniParc]FASTAAdd to Basket

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MYYSQACRLS IFLILIIFSI GLSEAHVNDI QLAVEKRAEA PISEYLVSEK    50
LDGVRGYWDG TQLFTRSGRL ISAPQWFTRG FPDYALDGEL WMGRGTFEQI 100
SSLIRSKHPK QERWREVKFM VFDLPSHSQV FTERYAIAKN ELANNSIYLS 150
VIEQKRFDSV QALDTWFSRV IEQGGEGLML HHNQSLYLSG RNRDVIKLKP 200
LYDAEARVVA HQEGQGKFNG MLGALVVETP SGIRFKLGTG FTVSERRHPP 250
KIGSIVTYQY SGLTQKGTPR FASFLRVRFM E 281
Length:281
Mass (Da):32,124
Last modified:November 13, 2007 - v1
Checksum:i0DF4C448E44ECC24
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000821 Genomic DNA. Translation: ABV37246.1.
RefSeqiYP_001474374.1. NC_009831.1.

Genome annotation databases

EnsemblBacteriaiABV37246; ABV37246; Ssed_2639.
GeneIDi5613096.
KEGGisse:Ssed_2639.
PATRICi23562947. VBISheSed62411_2812.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000821 Genomic DNA. Translation: ABV37246.1 .
RefSeqi YP_001474374.1. NC_009831.1.

3D structure databases

ProteinModelPortali A8FWM3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 425104.Ssed_2639.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABV37246 ; ABV37246 ; Ssed_2639 .
GeneIDi 5613096.
KEGGi sse:Ssed_2639.
PATRICi 23562947. VBISheSed62411_2812.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000293070.
KOi K01971.
OMAi GKGQFEN.
OrthoDBi EOG60919Q.

Enzyme and pathway databases

BioCyci SSED425104:GH7Q-2737-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HAW-EB3Imported.

Entry informationi

Entry nameiA8FWM3_SHESH
AccessioniPrimary (citable) accession number: A8FWM3
Entry historyi
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: June 11, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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