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A8FWM3

- A8FWM3_SHESH

UniProt

A8FWM3 - A8FWM3_SHESH

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Ssed_2639

Organism
Shewanella sediminis (strain HAW-EB3)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 40 (01 Oct 2014)
      Sequence version 1 (13 Nov 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSSED425104:GH7Q-2737-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Ssed_2639Imported
    OrganismiShewanella sediminis (strain HAW-EB3)Imported
    Taxonomic identifieri425104 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
    ProteomesiUP000002015: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2626 PotentialImportedAdd
    BLAST
    Chaini27 – 281255 PotentialImportedPRO_5000278432Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi425104.Ssed_2639.

    Structurei

    3D structure databases

    ProteinModelPortaliA8FWM3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    SignalImported

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000293070.
    KOiK01971.
    OMAiGKGQFEN.
    OrthoDBiEOG60919Q.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    A8FWM3-1 [UniParc]FASTAAdd to Basket

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    MYYSQACRLS IFLILIIFSI GLSEAHVNDI QLAVEKRAEA PISEYLVSEK    50
    LDGVRGYWDG TQLFTRSGRL ISAPQWFTRG FPDYALDGEL WMGRGTFEQI 100
    SSLIRSKHPK QERWREVKFM VFDLPSHSQV FTERYAIAKN ELANNSIYLS 150
    VIEQKRFDSV QALDTWFSRV IEQGGEGLML HHNQSLYLSG RNRDVIKLKP 200
    LYDAEARVVA HQEGQGKFNG MLGALVVETP SGIRFKLGTG FTVSERRHPP 250
    KIGSIVTYQY SGLTQKGTPR FASFLRVRFM E 281
    Length:281
    Mass (Da):32,124
    Last modified:November 13, 2007 - v1
    Checksum:i0DF4C448E44ECC24
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000821 Genomic DNA. Translation: ABV37246.1.
    RefSeqiYP_001474374.1. NC_009831.1.

    Genome annotation databases

    EnsemblBacteriaiABV37246; ABV37246; Ssed_2639.
    GeneIDi5613096.
    KEGGisse:Ssed_2639.
    PATRICi23562947. VBISheSed62411_2812.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000821 Genomic DNA. Translation: ABV37246.1 .
    RefSeqi YP_001474374.1. NC_009831.1.

    3D structure databases

    ProteinModelPortali A8FWM3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 425104.Ssed_2639.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABV37246 ; ABV37246 ; Ssed_2639 .
    GeneIDi 5613096.
    KEGGi sse:Ssed_2639.
    PATRICi 23562947. VBISheSed62411_2812.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000293070.
    KOi K01971.
    OMAi GKGQFEN.
    OrthoDBi EOG60919Q.

    Enzyme and pathway databases

    BioCyci SSED425104:GH7Q-2737-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR029319. DNA_ligase_OB.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    PF14743. DNA_ligase_OB_2. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HAW-EB3Imported.

    Entry informationi

    Entry nameiA8FWM3_SHESH
    AccessioniPrimary (citable) accession number: A8FWM3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 13, 2007
    Last sequence update: November 13, 2007
    Last modified: October 1, 2014
    This is version 40 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3