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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Ssed_2639

Organism
Shewanella sediminis (strain HAW-EB3)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSSED425104:GH7Q-2737-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Ssed_2639Imported
OrganismiShewanella sediminis (strain HAW-EB3)Imported
Taxonomic identifieri425104 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002015 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2626 PotentialImportedAdd
BLAST
Chaini27 – 281255 PotentialImportedPRO_5000278432Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi425104.Ssed_2639.

Structurei

3D structure databases

ProteinModelPortaliA8FWM3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A8FWM3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYYSQACRLS IFLILIIFSI GLSEAHVNDI QLAVEKRAEA PISEYLVSEK
60 70 80 90 100
LDGVRGYWDG TQLFTRSGRL ISAPQWFTRG FPDYALDGEL WMGRGTFEQI
110 120 130 140 150
SSLIRSKHPK QERWREVKFM VFDLPSHSQV FTERYAIAKN ELANNSIYLS
160 170 180 190 200
VIEQKRFDSV QALDTWFSRV IEQGGEGLML HHNQSLYLSG RNRDVIKLKP
210 220 230 240 250
LYDAEARVVA HQEGQGKFNG MLGALVVETP SGIRFKLGTG FTVSERRHPP
260 270 280
KIGSIVTYQY SGLTQKGTPR FASFLRVRFM E
Length:281
Mass (Da):32,124
Last modified:November 13, 2007 - v1
Checksum:i0DF4C448E44ECC24
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000821 Genomic DNA. Translation: ABV37246.1.
RefSeqiYP_001474374.1. NC_009831.1.

Genome annotation databases

EnsemblBacteriaiABV37246; ABV37246; Ssed_2639.
KEGGisse:Ssed_2639.
PATRICi23562947. VBISheSed62411_2812.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000821 Genomic DNA. Translation: ABV37246.1.
RefSeqiYP_001474374.1. NC_009831.1.

3D structure databases

ProteinModelPortaliA8FWM3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi425104.Ssed_2639.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABV37246; ABV37246; Ssed_2639.
KEGGisse:Ssed_2639.
PATRICi23562947. VBISheSed62411_2812.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000293070.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG60919Q.

Enzyme and pathway databases

BioCyciSSED425104:GH7Q-2737-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HAW-EB3Imported.

Entry informationi

Entry nameiA8FWM3_SHESH
AccessioniPrimary (citable) accession number: A8FWM3
Entry historyi
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: April 1, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.