A8FWM3 (A8FWM3_SHESH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABV37246.1

Gene names

Ordered Locus Names:

Ssed_2639 EMBL ABV37246.1

Organism

Shewanella sediminis (strain HAW-EB3) [Complete proteome] [HAMAP] EMBL ABV37246.1

Taxonomic identifier

425104 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella › Shewanella sediminis

Protein attributes

Sequence length	281 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABV37246.1
Molecular function	Ligase EMBL ABV37246.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 26	26	Potential EMBL ABV37246.1
	Chain	27 – 281	255	Potential		PRO_5000278432

Sequences

	Sequence		Length	Mass (Da)
	A8FWM3 [UniParc]. Last modified November 13, 2007. Version 1. Checksum: 0DF4C448E44ECC24	FASTA	281	32,124
	10 20 30 40 50 60 MYYSQACRLS IFLILIIFSI GLSEAHVNDI QLAVEKRAEA PISEYLVSEK LDGVRGYWDG 70 80 90 100 110 120 TQLFTRSGRL ISAPQWFTRG FPDYALDGEL WMGRGTFEQI SSLIRSKHPK QERWREVKFM 130 140 150 160 170 180 VFDLPSHSQV FTERYAIAKN ELANNSIYLS VIEQKRFDSV QALDTWFSRV IEQGGEGLML 190 200 210 220 230 240 HHNQSLYLSG RNRDVIKLKP LYDAEARVVA HQEGQGKFNG MLGALVVETP SGIRFKLGTG 250 260 270 280 FTVSERRHPP KIGSIVTYQY SGLTQKGTPR FASFLRVRFM E

References

[1]

"Complete sequence of Shewanella sediminis HAW-EB3." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Kim E., Zhao J.-S., Richardson P. Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HAW-EB3 EMBL ABV37246.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000821 Genomic DNA. Translation: ABV37246.1.
RefSeq	YP_001474374.1. NC_009831.1.
3D structure databases
ProteinModelPortal	A8FWM3.
ModBase	Search...
Protein-protein interaction databases
STRING	425104.Ssed_2639.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABV37246; ABV37246; Ssed_2639.
GeneID	5613096.
KEGG	sse:Ssed_2639.
PATRIC	23562947. VBISheSed62411_2812.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000293070.
KO	K01971.
OMA	VRGYWDG.
ProtClustDB	PRK09125.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A8FWM3_SHESH

Accession

Primary (citable) accession number: A8FWM3

Entry history

Integrated into UniProtKB/TrEMBL:	November 13, 2007
Last sequence update:	November 13, 2007
Last modified:	May 1, 2013
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)