A8FW82 (A8FW82_SHESH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Cystathionine beta-lyase EMBL ABV37105.1

Gene names

Ordered Locus Names:

Ssed_2496

Organism

Shewanella sediminis (strain HAW-EB3) [Complete proteome] [HAMAP] EMBL ABV37105.1

Taxonomic identifier

425104 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	411 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Lyase EMBL ABV37105.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cellular amino acid metabolic process Inferred from electronic annotation. Source: InterPro
Cellular component	cytoplasm Inferred from electronic annotation. Source: InterPro
Molecular function	cystathionine beta-lyase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8FW82 [UniParc]. Last modified November 13, 2007. Version 1. Checksum: 7EC2C605EB6E31C8	FASTA	411	45,692
	10 20 30 40 50 60 MLRWLNNNSI LFGCGQYLMK KETQIISTGR DKKWTKGVIN PPVFRASTMV FDTMDEMRFA 70 80 90 100 110 120 IKNRANGEMF YGRRGGPTHF AFQAAIAELE GGVGTALYPS GSAAISGALL SFLKAGDHLL 130 140 150 160 170 180 MVDSAYEPTR DLCNKLLAGF GIETTYYDPM IGAGISELIR PNTKVLFLES PGSITMEVQD 190 200 210 220 230 240 VPTLSEIAHK HDIVVMLDNT WASPINSRPF DMGVDISIQA ATKYIVGHSD VMMGTATSNE 250 260 270 280 290 300 AHWDQLRENS YLMGQCTSPD DVYLANRGLR TLGVRMQQHE QNALKVANWL ATRPEVDHIR 310 320 330 340 350 360 HPAFDTCPGH QFFKRDFSAS NGLFSFVLKE GDLNSVTALV ENMHHFKMGF SWGGFESLIL 370 380 390 400 410 GVFGIDKLRT ATKWDSSKPL IRLHIGLENP DDLIADLEAG FERFNAALNK R

References

[1]

"Complete sequence of Shewanella sediminis HAW-EB3." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Kim E., Zhao J.-S., Richardson P. Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HAW-EB3.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000821 Genomic DNA. Translation: ABV37105.1.
RefSeq	YP_001474233.1. NC_009831.1.
3D structure databases
ProteinModelPortal	A8FW82.
SMR	A8FW82. Positions 20-404.
ModBase	Search...
Protein-protein interaction databases
STRING	A8FW82.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5611351.
GenomeReviews	Gene locus Ssed_2496 in contig CP000821_GR.
KEGG	sse:Ssed_2496.
NMPDR	fig|425104.3.peg.2208.
PATRIC	23562655. VBISheSed62411_2666.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0626.
HOGENOM	HBG754729.
OMA	REQSYLM.
ProtClustDB	PRK09028.
Enzyme and pathway databases
BioCyc	SSED425104:SSED_2496-MONOMER.
Family and domain databases
InterPro	IPR000277. Cys/Met-Metab_PyrdxlP-dep_enz. IPR006233. Cys_b_lyase_bac. IPR015424. PyrdxlP-dep_Trfase_major_dom. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Gene3D	G3DSA:3.40.640.10. PyrdxlP-dep_Trfase_major_sub1. 1 hit. G3DSA:3.90.1150.10. PyrdxlP-dep_Trfase_major_sub2. 1 hit.
KO	K01760.
PANTHER	PTHR11808:SF8. Cys_b_lyase_bac. 1 hit. PTHR11808. Cys_Met_Meta_PP. 1 hit.
Pfam	PF01053. Cys_Met_Meta_PP. 1 hit. [Graphical view]
PIRSF	PIRSF001434. CGS. 1 hit.
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01324. Cysta_beta_ly_B. 1 hit.
PROSITE	PS00868. CYS_MET_METAB_PP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A8FW82_SHESH

Accession

Primary (citable) accession number: A8FW82

Entry history

Integrated into UniProtKB/TrEMBL:	November 13, 2007
Last sequence update:	November 13, 2007
Last modified:	January 25, 2012
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)