A8FSA7 (A8FSA7_SHESH) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Choline dehydrogenase EMBL ABV35730.1
EC=1.1.99.1 EMBL ABV35730.1

Gene names

Ordered Locus Names:

Ssed_1119

Organism

Shewanella sediminis (strain HAW-EB3) [Complete proteome] [HAMAP] EMBL ABV35730.1

Taxonomic identifier

425104 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length	564 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine By similarity. SAAS SAAS007867
Catalytic activity	Choline + acceptor = betaine aldehyde + reduced acceptor. SAAS SAAS007867
Cofactor	FAD By similarity. SAAS SAAS007867
Pathway	Amine and polyamine biosynthesis; betaine biosynthesis via choline pathway; betaine aldehyde from choline (cytochrome c reductase route): step 1/1. SAAS SAAS007867

Ontologies

Keywords
Ligand	FAD SAAS SAAS011533 Flavoprotein SAAS SAAS011533
Molecular function	Oxidoreductase SAAS SAAS007867 EMBL ABV35730.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	glycine betaine biosynthetic process from choline Inferred from electronic annotation. Source: InterPro
Molecular function	choline dehydrogenase activity Inferred from electronic annotation. Source: EC flavin adenine dinucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8FSA7 [UniParc]. Last modified November 13, 2007. Version 1. Checksum: 7EDB4A827CC1C12D	FASTA	564	62,246
	10 20 30 40 50 60 MTQSTTEKYD YIIVGAGSAG CVLANRLSAD ANNSVLLIET GGSDRSIFIQ MPTALSIPMN 70 80 90 100 110 120 TPKYAWQFET EAEPHLDNRR MHCPRGKVLG GSSSINGMVY VRGHARDFDE WQQEGAKDWD 130 140 150 160 170 180 YAHCLPYFKK AESWAFGEDD YRGVDGPLAV NNGNEMKNPL YQAFVDAGVD AGYMATSDYN 190 200 210 220 230 240 GAQQEGFGPM HMTIKNGVRW STSNAYLRPA MKRENLTVIT HAQVHKVLFE GKQTVGVRFE 250 260 270 280 290 300 RKGKMTDVHC SKEVVLSAGS IGSPHILQLS GIGAAETLAK AGIEQVHELP GVGENLQDHL 310 320 330 340 350 360 EFYFQFKCLK PISLNGKIDP LNKLFIGTRW ILNRTGLGAT NHFESCGFIR SKAGLEWPDL 370 380 390 400 410 420 QYHFLPAAMR YDGKEAFAGH GFQVHIGHNK PKSRGAVKVV SSDARVAPSI QFNYLSHKDD 430 440 450 460 470 480 IEGFRACVRL TREIINQPAL DEYRGEEIQP GTSVQTDEEI DTFVRSSVES AYHPSCSCKM 490 500 510 520 530 540 GEDAMAVVDS ETKVHGIQGL RVVDSSIFPT IPNGNLNSPT IMVAERAADI ILGMTPLPAS 550 560 SATVTFAQQW QQKQRLRAPK RQLA

References

[1]

"Complete sequence of Shewanella sediminis HAW-EB3." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. , Kim E., Zhao J.-S., Richardson P. Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: HAW-EB3.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000821 Genomic DNA. Translation: ABV35730.1.
RefSeq	YP_001472858.1. NC_009831.1.
3D structure databases
ProteinModelPortal	A8FSA7.
ModBase	Search...
Protein-protein interaction databases
STRING	A8FSA7.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5611607.
GenomeReviews	Gene locus Ssed_1119 in contig CP000821_GR.
KEGG	sse:Ssed_1119.
NMPDR	fig|425104.3.peg.986.
PATRIC	23559554. VBISheSed62411_1187.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2303.
HOGENOM	HBG734713.
OMA	HMTVKNG.
ProtClustDB	PRK02106.
Enzyme and pathway databases
BioCyc	SSED425104:SSED_1119-MONOMER.
Family and domain databases
InterPro	IPR011533. Choline_dehydrogenase. IPR012132. GMC_OxRdtase. IPR000172. GMC_OxRdtase_N. IPR007867. GMC_OxRtase_C. [Graphical view]
KO	K00108.
Pfam	PF05199. GMC_oxred_C. 1 hit. PF00732. GMC_oxred_N. 1 hit. [Graphical view]
PIRSF	PIRSF000137. Alcohol_oxidase. 1 hit.
TIGRFAMs	TIGR01810. BetA. 1 hit.
PROSITE	PS00623. GMC_OXRED_1. 1 hit. PS00624. GMC_OXRED_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A8FSA7_SHESH

Accession

Primary (citable) accession number: A8FSA7

Entry history

Integrated into UniProtKB/TrEMBL:	November 13, 2007
Last sequence update:	November 13, 2007
Last modified:	January 25, 2012
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)