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Protein

ATP synthase subunit beta

Gene

atpD

Organism
Bacillus pumilus (strain SAFR-032)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.UniRule annotation

Catalytic activityi

ATP + H2O + H+(In) = ADP + phosphate + H+(Out).UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi158 – 165ATPUniRule annotation8

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHydrolase
Biological processATP synthesis, Hydrogen ion transport, Ion transport, Transport
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciBPUM315750:G1G9U-3378-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
ATP synthase subunit betaUniRule annotation (EC:3.6.3.14UniRule annotation)
Alternative name(s):
ATP synthase F1 sector subunit betaUniRule annotation
F-ATPase subunit betaUniRule annotation
Gene namesi
Name:atpDUniRule annotation
Ordered Locus Names:BPUM_3326
OrganismiBacillus pumilus (strain SAFR-032)
Taxonomic identifieri315750 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001355 Componenti: Chromosome

Subcellular locationi

  • Cell membrane UniRule annotation; Peripheral membrane protein UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cell membrane, CF(1), Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000677221 – 473ATP synthase subunit betaAdd BLAST473

Proteomic databases

PRIDEiA8FIB2

Interactioni

Subunit structurei

F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a1, b2 and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF1 is attached to CF0 by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.UniRule annotation

Protein-protein interaction databases

STRINGi315750.BPUM_3326

Structurei

3D structure databases

ProteinModelPortaliA8FIB2
SMRiA8FIB2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATPase alpha/beta chains family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105C4J Bacteria
COG0055 LUCA
HOGENOMiHOG000009605
KOiK02112
OMAiFNMIMDG
OrthoDBiPOG091H014C

Family and domain databases

Gene3Di1.10.1140.101 hit
HAMAPiMF_01347 ATP_synth_beta_bact, 1 hit
InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR005722 ATP_synth_F1_bsu
IPR020003 ATPase_a/bsu_AS
IPR004100 ATPase_F1/V1/A1_a/bsu_N
IPR036121 ATPase_F1/V1/A1_a/bsu_N_sf
IPR000194 ATPase_F1/V1/A1_a/bsu_nucl-bd
IPR024034 ATPase_F1/V1_b/a_C
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF00006 ATP-synt_ab, 1 hit
PF02874 ATP-synt_ab_N, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SUPFAMiSSF50615 SSF50615, 1 hit
SSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR01039 atpD, 1 hit
PROSITEiView protein in PROSITE
PS00152 ATPASE_ALPHA_BETA, 1 hit

Sequencei

Sequence statusi: Complete.

A8FIB2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTGRISQIM GPVVDVRFED GHLPEIYNAI RVSHKAESES EVDIDLTLEV
60 70 80 90 100
ALHLGDDTVR TIAMASTDGV KRGMEAVDLG KPISVPVGNV TLGRVFNVLG
110 120 130 140 150
DNIDLDEPLG VEAQRDPIHR QAPSFDQLST EVEILETGIK VVDLLAPYIK
160 170 180 190 200
GGKIGLFGGA GVGKTVLIQE LINNIAQEHG GISVFAGVGE RTREGNDLYY
210 220 230 240 250
EMKDSGVIEK TAMVFGQMNE PPGARMRVAL TGLTMAEHFR DELGQDVLFF
260 270 280 290 300
IDNIYRFTQA GSEVSALLGR MPSAVGYQPT LATEMGQLQE RITSTNVGSV
310 320 330 340 350
TSIQAIYVPA DDYTDPAPAT TFAHLDATTN LERKLTEMGI YPAVDPLAST
360 370 380 390 400
SRALAPEIVG EEHYAIAREV QQTLQRYKEL QDIIAILGMD ELSEDDKLVV
410 420 430 440 450
HRARRVQFFL SQNFHVAEQF TGQKGSYVPL KETVKGFKEI LSGKYDHLPE
460 470
DAFRLVGRIE EVVEKAKEMG VEA
Length:473
Mass (Da):51,844
Last modified:November 13, 2007 - v1
Checksum:i9F3BD3358E80A116
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000813 Genomic DNA Translation: ABV63979.1
RefSeqiWP_012011546.1, NC_009848.4

Genome annotation databases

EnsemblBacteriaiABV63979; ABV63979; BPUM_3326
GeneIDi31670007
KEGGibpu:BPUM_3326

Similar proteinsi

Entry informationi

Entry nameiATPB_BACP2
AccessioniPrimary (citable) accession number: A8FIB2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: November 13, 2007
Last modified: February 28, 2018
This is version 79 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome