A8FDV3 (A8FDV3_BACP2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Endo-1,4-beta-xylanase EMBL ABV62420.1
EC=3.2.1.8 EMBL ABV62420.1

Gene names

Name:	xynD EMBL ABV62420.1
Ordered Locus Names:	BPUM_1748

Organism

Bacillus pumilus (strain SAFR-032) [Complete proteome] [HAMAP]

Taxonomic identifier

315750 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length	511 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Biological process	Xylan degradation EMBL ABV62420.1
Molecular function	Glycosidase EMBL ABV62420.1 Hydrolase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	xylan catabolic process Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	carbohydrate binding Inferred from electronic annotation. Source: InterPro endo-1,4-beta-xylanase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8FDV3 [UniParc]. Last modified November 13, 2007. Version 1. Checksum: 04BD8381214EEBF8	FASTA	511	54,499
	10 20 30 40 50 60 MRKRMKCGLC FLILALVLSC IPVYDASAAS TPIAKRVGNA NPLIDHHLGA DPFALTYNGR 70 80 90 100 110 120 VYIYMSSDDY EYQSNGTIKD NSFANLNRVF VISSADMVNW TDHGAIPVAG ANGANGGKGI 130 140 150 160 170 180 AKWAGASWAP AAAVKKINGK DKFFLYFANS GGGIGVLTAD SPIGPWKDPI GKALVTPNTP 190 200 210 220 230 240 GMSGVVWLFD PAVFVDDDGT GYLYAGGGVP GGSNPTQGQW ANPKTARVLK LGPDMTSVAG 250 260 270 280 290 300 SASTIDAPFM FEDSGMHKYN GTYYYSYCIN FGGSHPADKP PGEIGYMTSS SPMGPFTYKG 310 320 330 340 350 360 HFLKNPGSFF GGGGNNHHAV FNFKNEWYVV YHTQTVSSAL YGAGKGYRSP HINKLVHNAD 370 380 390 400 410 420 GSLREVAANF EGVKQLSNLN PYQRVEAETF AWNGRILTEA SSAPGGPVNN QHVTNIQNGD 430 440 450 460 470 480 WVAVSNVDFG SRGARTFKAN VAAASGGQIE VRLGSPDGRM VGTLNVPSSG GNWREIETTV 490 500 510 NGATGVHNVF FVFKGNGANL FQFDSWQFTQ R

References

[1]

"Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032." Gioia J., Yerrapragada S., Qin X., Jiang H., Igboeli O.C., Muzny D., Dugan-Rocha S., Ding Y., Hawes A., Liu W., Perez L., Kovar C., Dinh H., Lee S., Nazareth L., Blyth P., Holder M., Buhay C. , Tirumalai M.R., Liu Y., Dasgupta I., Bokhetache L., Fujita M., Karouia F., Eswara Moorthy P., Siefert J., Uzman A., Buzumbo P., Verma A., Zwiya H., McWilliams B.D., Olowu A., Clinkenbeard K.D., Newcombe D., Golebiewski L., Petrosino J.F., Nicholson W.L., Fox G.E., Venkateswaran K., Highlander S.K., Weinstock G.M. PLoS ONE 2:E928-E928(2007) [PubMed: 17895969] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000813 Genomic DNA. Translation: ABV62420.1.
RefSeq	YP_001486980.1. NC_009848.1.
3D structure databases
ProteinModelPortal	A8FDV3.
ModBase	Search...
Protein-protein interaction databases
STRING	A8FDV3.
Protein family/group databases
CAZy	CBM6. Carbohydrate-Binding Module Family 6. GH43. Glycoside Hydrolase Family 43.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBBACT00000065416; EBBACP00000063749; EBBACG00000065407.
GeneID	5621015.
GenomeReviews	Gene locus BPUM_1748 in contig CP000813_GR.
KEGG	bpu:BPUM_1748.
PATRIC	18967370. VBIBacPum16546_1781.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	NOG26186.
GeneTree	EBGT00050000001234.
HOGENOM	HBG585375.
OMA	WTDHGEV.
ProtClustDB	CLSK865478.
Family and domain databases
InterPro	IPR006584. Cellulose-bd_IV. IPR005084. CMB_fam6. IPR008979. Galactose-bd-like. IPR006710. Glyco_hydro_43. IPR023296. Glyco_hydro_43_beta-prop. [Graphical view]
Gene3D	G3DSA:2.115.10.20. Glyco_hydro_43_beta-prop. 1 hit.
PANTHER	PTHR22925. Glyco_hydro_43. 1 hit.
Pfam	PF03422. CBM_6. 1 hit. PF04616. Glyco_hydro_43. 1 hit. [Graphical view]
SMART	SM00606. CBD_IV. 1 hit. [Graphical view]
SUPFAM	SSF49785. Gal_bind_like. 1 hit. SSF75005. Glyco_hydro_43_beta-prop. 1 hit.
PROSITE	PS51175. CBM6. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A8FDV3_BACP2

Accession

Primary (citable) accession number: A8FDV3

Entry history

Integrated into UniProtKB/TrEMBL:	November 13, 2007
Last sequence update:	November 13, 2007
Last modified:	December 14, 2011
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)