Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

A8FDM8

- A8FDM8_BACP2

UniProt

A8FDM8 - A8FDM8_BACP2

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

Possible DNA ligase (ATP)

Gene

ykoU

Organism
Bacillus pumilus (strain SAFR-032)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPUM315750:GH6N-1721-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Possible DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
Gene namesi
Name:ykoUImported
Ordered Locus Names:BPUM_1666Imported
OrganismiBacillus pumilus (strain SAFR-032)Imported
Taxonomic identifieri315750 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001355: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi315750.BPUM_1666.

Structurei

3D structure databases

ProteinModelPortaliA8FDM8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000008893.
KOiK01971.
OMAiHVLAAIC.
OrthoDBiEOG661H49.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8FDM8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKPMRLTAAH DVPTGADWVY ELKYDGFRVI LTWDQNEIHL ESRAGKRLNE
60 70 80 90 100
QFPEVIEQCE QLRDHFAPLL PLTFDGELVF LLDEQQSDFA RVQQRGRLKN
110 120 130 140 150
KEAIKLQAER FPCHLIAFDL LRCKGKSLID LPLMERKTQL QQVFKAAKLP
160 170 180 190 200
SSVQLEHPSL LQLIHTDTNS EHMKKLMTTY LAEGLVAKKR TSKWHDHTRS
210 220 230 240 250
KEWLKVKNWR YVSVIVTRFD KENGYFQGCI YQDHHLTEVV QFKHGFSKEE
260 270 280 290 300
EQTLRTLFQT NGKQTGASAY EIPPSIVASI ACISFDGSAL REPRFSSFLL
310 320 330 340 350
DTDPTACTFQ QMLKQLYPLP TVIEITHPEK PIVPALHLNK ADYLLYLRQA
360 370 380 390 400
APYLLPFLRE RRLTLIRFPH GAGDEFFYQK STPDYAPDYV LTDQADDIAY
410 420 430 440 450
TVCNDPQTLL WLGNQLAMEF HIPFETRDTD RPTEIVFDLD PPSVNEFHLA
460 470 480 490 500
IEAAKRIKTL LDGLFLTAFI KTSGGKGLQV YIPLKKNAFT YEETRTFTAF
510 520 530 540 550
ICQFLCEQAP ELFTLERLKK KRGNRLYLDY IQHDAGKTII APYSPRGNEL
560 570 580 590 600
GLVATPLEWD ELRQDGLHPS LFTMPSVIER LKEKGDPFRR MRHLVNDDTF
610 620
RQVLHRLEDM IPAHKMDIRG H
Length:621
Mass (Da):71,989
Last modified:November 13, 2007 - v1
Checksum:iF75EFA5776EA9D3B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000813 Genomic DNA. Translation: ABV62345.1.
RefSeqiWP_012010077.1. NC_009848.1.
YP_001486905.1. NC_009848.1.

Genome annotation databases

EnsemblBacteriaiABV62345; ABV62345; BPUM_1666.
GeneIDi5620933.
KEGGibpu:BPUM_1666.
PATRICi18967184. VBIBacPum16546_1688.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000813 Genomic DNA. Translation: ABV62345.1 .
RefSeqi WP_012010077.1. NC_009848.1.
YP_001486905.1. NC_009848.1.

3D structure databases

ProteinModelPortali A8FDM8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 315750.BPUM_1666.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABV62345 ; ABV62345 ; BPUM_1666 .
GeneIDi 5620933.
KEGGi bpu:BPUM_1666.
PATRICi 18967184. VBIBacPum16546_1688.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000008893.
KOi K01971.
OMAi HVLAAIC.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BPUM315750:GH6N-1721-MONOMER.

Family and domain databases

InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SAFR-032Imported.

Entry informationi

Entry nameiA8FDM8_BACP2
AccessioniPrimary (citable) accession number: A8FDM8
Entry historyi
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: October 1, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3