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Protein
Submitted name:

Possible DNA ligase (ATP)

Gene

ykoU

Organism
Bacillus pumilus (strain SAFR-032)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPUM315750:GH6N-1721-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Possible DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
Gene namesi
Name:ykoUImported
Ordered Locus Names:BPUM_1666Imported
OrganismiBacillus pumilus (strain SAFR-032)Imported
Taxonomic identifieri315750 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001355 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi315750.BPUM_1666.

Structurei

3D structure databases

ProteinModelPortaliA8FDM8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000008893.
KOiK01971.
OMAiWRYEVKY.
OrthoDBiEOG661H49.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8FDM8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKPMRLTAAH DVPTGADWVY ELKYDGFRVI LTWDQNEIHL ESRAGKRLNE
60 70 80 90 100
QFPEVIEQCE QLRDHFAPLL PLTFDGELVF LLDEQQSDFA RVQQRGRLKN
110 120 130 140 150
KEAIKLQAER FPCHLIAFDL LRCKGKSLID LPLMERKTQL QQVFKAAKLP
160 170 180 190 200
SSVQLEHPSL LQLIHTDTNS EHMKKLMTTY LAEGLVAKKR TSKWHDHTRS
210 220 230 240 250
KEWLKVKNWR YVSVIVTRFD KENGYFQGCI YQDHHLTEVV QFKHGFSKEE
260 270 280 290 300
EQTLRTLFQT NGKQTGASAY EIPPSIVASI ACISFDGSAL REPRFSSFLL
310 320 330 340 350
DTDPTACTFQ QMLKQLYPLP TVIEITHPEK PIVPALHLNK ADYLLYLRQA
360 370 380 390 400
APYLLPFLRE RRLTLIRFPH GAGDEFFYQK STPDYAPDYV LTDQADDIAY
410 420 430 440 450
TVCNDPQTLL WLGNQLAMEF HIPFETRDTD RPTEIVFDLD PPSVNEFHLA
460 470 480 490 500
IEAAKRIKTL LDGLFLTAFI KTSGGKGLQV YIPLKKNAFT YEETRTFTAF
510 520 530 540 550
ICQFLCEQAP ELFTLERLKK KRGNRLYLDY IQHDAGKTII APYSPRGNEL
560 570 580 590 600
GLVATPLEWD ELRQDGLHPS LFTMPSVIER LKEKGDPFRR MRHLVNDDTF
610 620
RQVLHRLEDM IPAHKMDIRG H
Length:621
Mass (Da):71,989
Last modified:November 13, 2007 - v1
Checksum:iF75EFA5776EA9D3B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000813 Genomic DNA. Translation: ABV62345.1.
RefSeqiWP_012010077.1. NC_009848.1.

Genome annotation databases

EnsemblBacteriaiABV62345; ABV62345; BPUM_1666.
GeneIDi5620933.
KEGGibpu:BPUM_1666.
PATRICi18967184. VBIBacPum16546_1688.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000813 Genomic DNA. Translation: ABV62345.1.
RefSeqiWP_012010077.1. NC_009848.1.

3D structure databases

ProteinModelPortaliA8FDM8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi315750.BPUM_1666.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABV62345; ABV62345; BPUM_1666.
GeneIDi5620933.
KEGGibpu:BPUM_1666.
PATRICi18967184. VBIBacPum16546_1688.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000008893.
KOiK01971.
OMAiWRYEVKY.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciBPUM315750:GH6N-1721-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. LigD_ligase_dom.
IPR014145. LigD_pol_dom.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SAFR-032Imported.

Entry informationi

Entry nameiA8FDM8_BACP2
AccessioniPrimary (citable) accession number: A8FDM8
Entry historyi
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: July 22, 2015
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.