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A8FDM8

- A8FDM8_BACP2

UniProt

A8FDM8 - A8FDM8_BACP2

Protein
Submitted name:

Possible DNA ligase (ATP)

Gene

ykoU

Organism
Bacillus pumilus (strain SAFR-032)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 47 (01 Oct 2014)
      Sequence version 1 (13 Nov 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciBPUM315750:GH6N-1721-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Possible DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ykoUImported
    Ordered Locus Names:BPUM_1666Imported
    OrganismiBacillus pumilus (strain SAFR-032)Imported
    Taxonomic identifieri315750 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000001355: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi315750.BPUM_1666.

    Structurei

    3D structure databases

    ProteinModelPortaliA8FDM8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000008893.
    KOiK01971.
    OMAiHVLAAIC.
    OrthoDBiEOG661H49.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A8FDM8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKPMRLTAAH DVPTGADWVY ELKYDGFRVI LTWDQNEIHL ESRAGKRLNE    50
    QFPEVIEQCE QLRDHFAPLL PLTFDGELVF LLDEQQSDFA RVQQRGRLKN 100
    KEAIKLQAER FPCHLIAFDL LRCKGKSLID LPLMERKTQL QQVFKAAKLP 150
    SSVQLEHPSL LQLIHTDTNS EHMKKLMTTY LAEGLVAKKR TSKWHDHTRS 200
    KEWLKVKNWR YVSVIVTRFD KENGYFQGCI YQDHHLTEVV QFKHGFSKEE 250
    EQTLRTLFQT NGKQTGASAY EIPPSIVASI ACISFDGSAL REPRFSSFLL 300
    DTDPTACTFQ QMLKQLYPLP TVIEITHPEK PIVPALHLNK ADYLLYLRQA 350
    APYLLPFLRE RRLTLIRFPH GAGDEFFYQK STPDYAPDYV LTDQADDIAY 400
    TVCNDPQTLL WLGNQLAMEF HIPFETRDTD RPTEIVFDLD PPSVNEFHLA 450
    IEAAKRIKTL LDGLFLTAFI KTSGGKGLQV YIPLKKNAFT YEETRTFTAF 500
    ICQFLCEQAP ELFTLERLKK KRGNRLYLDY IQHDAGKTII APYSPRGNEL 550
    GLVATPLEWD ELRQDGLHPS LFTMPSVIER LKEKGDPFRR MRHLVNDDTF 600
    RQVLHRLEDM IPAHKMDIRG H 621
    Length:621
    Mass (Da):71,989
    Last modified:November 13, 2007 - v1
    Checksum:iF75EFA5776EA9D3B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000813 Genomic DNA. Translation: ABV62345.1.
    RefSeqiWP_012010077.1. NC_009848.1.
    YP_001486905.1. NC_009848.1.

    Genome annotation databases

    EnsemblBacteriaiABV62345; ABV62345; BPUM_1666.
    GeneIDi5620933.
    KEGGibpu:BPUM_1666.
    PATRICi18967184. VBIBacPum16546_1688.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000813 Genomic DNA. Translation: ABV62345.1 .
    RefSeqi WP_012010077.1. NC_009848.1.
    YP_001486905.1. NC_009848.1.

    3D structure databases

    ProteinModelPortali A8FDM8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 315750.BPUM_1666.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABV62345 ; ABV62345 ; BPUM_1666 .
    GeneIDi 5620933.
    KEGGi bpu:BPUM_1666.
    PATRICi 18967184. VBIBacPum16546_1688.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000008893.
    KOi K01971.
    OMAi HVLAAIC.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BPUM315750:GH6N-1721-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: SAFR-032Imported.

    Entry informationi

    Entry nameiA8FDM8_BACP2
    AccessioniPrimary (citable) accession number: A8FDM8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 13, 2007
    Last sequence update: November 13, 2007
    Last modified: October 1, 2014
    This is version 47 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3