A8FDM8 (A8FDM8_BACP2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Possible DNA ligase (ATP) EMBL ABV62345.1
EC=6.5.1.1 EMBL ABV62345.1

Gene names

Name:	ykoU EMBL ABV62345.1
Ordered Locus Names:	BPUM_1666

Organism

Bacillus pumilus (strain SAFR-032) [Complete proteome] [HAMAP] EMBL ABV62345.1

Taxonomic identifier

315750 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus pumilus

Protein attributes

Sequence length	621 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABV62345.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8FDM8 [UniParc]. Last modified November 13, 2007. Version 1. Checksum: F75EFA5776EA9D3B	FASTA	621	71,989
	10 20 30 40 50 60 MKPMRLTAAH DVPTGADWVY ELKYDGFRVI LTWDQNEIHL ESRAGKRLNE QFPEVIEQCE 70 80 90 100 110 120 QLRDHFAPLL PLTFDGELVF LLDEQQSDFA RVQQRGRLKN KEAIKLQAER FPCHLIAFDL 130 140 150 160 170 180 LRCKGKSLID LPLMERKTQL QQVFKAAKLP SSVQLEHPSL LQLIHTDTNS EHMKKLMTTY 190 200 210 220 230 240 LAEGLVAKKR TSKWHDHTRS KEWLKVKNWR YVSVIVTRFD KENGYFQGCI YQDHHLTEVV 250 260 270 280 290 300 QFKHGFSKEE EQTLRTLFQT NGKQTGASAY EIPPSIVASI ACISFDGSAL REPRFSSFLL 310 320 330 340 350 360 DTDPTACTFQ QMLKQLYPLP TVIEITHPEK PIVPALHLNK ADYLLYLRQA APYLLPFLRE 370 380 390 400 410 420 RRLTLIRFPH GAGDEFFYQK STPDYAPDYV LTDQADDIAY TVCNDPQTLL WLGNQLAMEF 430 440 450 460 470 480 HIPFETRDTD RPTEIVFDLD PPSVNEFHLA IEAAKRIKTL LDGLFLTAFI KTSGGKGLQV 490 500 510 520 530 540 YIPLKKNAFT YEETRTFTAF ICQFLCEQAP ELFTLERLKK KRGNRLYLDY IQHDAGKTII 550 560 570 580 590 600 APYSPRGNEL GLVATPLEWD ELRQDGLHPS LFTMPSVIER LKEKGDPFRR MRHLVNDDTF 610 620 RQVLHRLEDM IPAHKMDIRG H

References

[1]

"Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032." Gioia J., Yerrapragada S., Qin X., Jiang H., Igboeli O.C., Muzny D., Dugan-Rocha S., Ding Y., Hawes A., Liu W., Perez L., Kovar C., Dinh H., Lee S., Nazareth L., Blyth P., Holder M., Buhay C. , Tirumalai M.R., Liu Y., Dasgupta I., Bokhetache L., Fujita M., Karouia F., Eswara Moorthy P., Siefert J., Uzman A., Buzumbo P., Verma A., Zwiya H., McWilliams B.D., Olowu A., Clinkenbeard K.D., Newcombe D., Golebiewski L., Petrosino J.F., Nicholson W.L., Fox G.E., Venkateswaran K., Highlander S.K., Weinstock G.M. PLoS ONE 2:E928-E928(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: SAFR-032.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000813 Genomic DNA. Translation: ABV62345.1.
RefSeq	YP_001486905.1. NC_009848.1.
3D structure databases
ProteinModelPortal	A8FDM8.
ModBase	Search...
Protein-protein interaction databases
STRING	315750.BPUM_1666.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABV62345; ABV62345; BPUM_1666.
GeneID	5620933.
KEGG	bpu:BPUM_1666.
PATRIC	18967184. VBIBacPum16546_1688.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000008893.
KO	K01971.
OMA	MASACKM.
ProtClustDB	PRK09633.
Enzyme and pathway databases
BioCyc	BPUM315750:GH6N-1755-MONOMER.
Family and domain databases
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR014145. LigD_pol. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
TIGRFAMs	TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A8FDM8_BACP2

Accession

Primary (citable) accession number: A8FDM8

Entry history

Integrated into UniProtKB/TrEMBL:	November 13, 2007
Last sequence update:	November 13, 2007
Last modified:	May 1, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)