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A8FDM8

- A8FDM8_BACP2

UniProt

A8FDM8 - A8FDM8_BACP2

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Protein
Submitted name: Possible DNA ligase (ATP)
Gene
ykoU, BPUM_1666
Organism
Bacillus pumilus (strain SAFR-032)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBPUM315750:GH6N-1721-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Possible DNA ligase (ATP)Imported (EC:6.5.1.1Imported)
Gene namesi
Name:ykoUImported
Ordered Locus Names:BPUM_1666Imported
OrganismiBacillus pumilus (strain SAFR-032)Imported
Taxonomic identifieri315750 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001355: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi315750.BPUM_1666.

Structurei

3D structure databases

ProteinModelPortaliA8FDM8.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000008893.
KOiK01971.
OMAiHVLAAIC.
OrthoDBiEOG661H49.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8FDM8-1 [UniParc]FASTAAdd to Basket

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MKPMRLTAAH DVPTGADWVY ELKYDGFRVI LTWDQNEIHL ESRAGKRLNE    50
QFPEVIEQCE QLRDHFAPLL PLTFDGELVF LLDEQQSDFA RVQQRGRLKN 100
KEAIKLQAER FPCHLIAFDL LRCKGKSLID LPLMERKTQL QQVFKAAKLP 150
SSVQLEHPSL LQLIHTDTNS EHMKKLMTTY LAEGLVAKKR TSKWHDHTRS 200
KEWLKVKNWR YVSVIVTRFD KENGYFQGCI YQDHHLTEVV QFKHGFSKEE 250
EQTLRTLFQT NGKQTGASAY EIPPSIVASI ACISFDGSAL REPRFSSFLL 300
DTDPTACTFQ QMLKQLYPLP TVIEITHPEK PIVPALHLNK ADYLLYLRQA 350
APYLLPFLRE RRLTLIRFPH GAGDEFFYQK STPDYAPDYV LTDQADDIAY 400
TVCNDPQTLL WLGNQLAMEF HIPFETRDTD RPTEIVFDLD PPSVNEFHLA 450
IEAAKRIKTL LDGLFLTAFI KTSGGKGLQV YIPLKKNAFT YEETRTFTAF 500
ICQFLCEQAP ELFTLERLKK KRGNRLYLDY IQHDAGKTII APYSPRGNEL 550
GLVATPLEWD ELRQDGLHPS LFTMPSVIER LKEKGDPFRR MRHLVNDDTF 600
RQVLHRLEDM IPAHKMDIRG H 621
Length:621
Mass (Da):71,989
Last modified:November 13, 2007 - v1
Checksum:iF75EFA5776EA9D3B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000813 Genomic DNA. Translation: ABV62345.1.
RefSeqiWP_012010077.1. NC_009848.1.
YP_001486905.1. NC_009848.1.

Genome annotation databases

EnsemblBacteriaiABV62345; ABV62345; BPUM_1666.
GeneIDi5620933.
KEGGibpu:BPUM_1666.
PATRICi18967184. VBIBacPum16546_1688.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000813 Genomic DNA. Translation: ABV62345.1 .
RefSeqi WP_012010077.1. NC_009848.1.
YP_001486905.1. NC_009848.1.

3D structure databases

ProteinModelPortali A8FDM8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 315750.BPUM_1666.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABV62345 ; ABV62345 ; BPUM_1666 .
GeneIDi 5620933.
KEGGi bpu:BPUM_1666.
PATRICi 18967184. VBIBacPum16546_1688.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000008893.
KOi K01971.
OMAi HVLAAIC.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BPUM315750:GH6N-1721-MONOMER.

Family and domain databases

InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: SAFR-032Imported.

Entry informationi

Entry nameiA8FDM8_BACP2
AccessioniPrimary (citable) accession number: A8FDM8
Entry historyi
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: September 3, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3