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A8FDM8 (A8FDM8_BACP2) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL ABV62345.1
Gene names
Name:ykoU EMBL ABV62345.1
Ordered Locus Names:BPUM_1666 EMBL ABV62345.1
OrganismBacillus pumilus (strain SAFR-032) [Complete proteome] [HAMAP] EMBL ABV62345.1
Taxonomic identifier315750 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length621 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABV62345.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A8FDM8 [UniParc].

Last modified November 13, 2007. Version 1.
Checksum: F75EFA5776EA9D3B

FASTA62171,989
        10         20         30         40         50         60 
MKPMRLTAAH DVPTGADWVY ELKYDGFRVI LTWDQNEIHL ESRAGKRLNE QFPEVIEQCE 

        70         80         90        100        110        120 
QLRDHFAPLL PLTFDGELVF LLDEQQSDFA RVQQRGRLKN KEAIKLQAER FPCHLIAFDL 

       130        140        150        160        170        180 
LRCKGKSLID LPLMERKTQL QQVFKAAKLP SSVQLEHPSL LQLIHTDTNS EHMKKLMTTY 

       190        200        210        220        230        240 
LAEGLVAKKR TSKWHDHTRS KEWLKVKNWR YVSVIVTRFD KENGYFQGCI YQDHHLTEVV 

       250        260        270        280        290        300 
QFKHGFSKEE EQTLRTLFQT NGKQTGASAY EIPPSIVASI ACISFDGSAL REPRFSSFLL 

       310        320        330        340        350        360 
DTDPTACTFQ QMLKQLYPLP TVIEITHPEK PIVPALHLNK ADYLLYLRQA APYLLPFLRE 

       370        380        390        400        410        420 
RRLTLIRFPH GAGDEFFYQK STPDYAPDYV LTDQADDIAY TVCNDPQTLL WLGNQLAMEF 

       430        440        450        460        470        480 
HIPFETRDTD RPTEIVFDLD PPSVNEFHLA IEAAKRIKTL LDGLFLTAFI KTSGGKGLQV 

       490        500        510        520        530        540 
YIPLKKNAFT YEETRTFTAF ICQFLCEQAP ELFTLERLKK KRGNRLYLDY IQHDAGKTII 

       550        560        570        580        590        600 
APYSPRGNEL GLVATPLEWD ELRQDGLHPS LFTMPSVIER LKEKGDPFRR MRHLVNDDTF 

       610        620 
RQVLHRLEDM IPAHKMDIRG H 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000813 Genomic DNA. Translation: ABV62345.1.
RefSeqYP_001486905.1. NC_009848.1.

3D structure databases

ProteinModelPortalA8FDM8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING315750.BPUM_1666.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABV62345; ABV62345; BPUM_1666.
GeneID5620933.
KEGGbpu:BPUM_1666.
PATRIC18967184. VBIBacPum16546_1688.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000008893.
KOK01971.
OMAWLKVKCT.
OrthoDBEOG661H49.
ProtClustDBPRK09633.

Enzyme and pathway databases

BioCycBPUM315750:GH6N-1721-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA8FDM8_BACP2
AccessionPrimary (citable) accession number: A8FDM8
Entry history
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: December 11, 2013
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)