A8F8Z8 (A8F8Z8_BACP2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA-directed DNA polymerase III delta prime subunit EMBL ABV60715.1
EC=2.7.7.7 EMBL ABV60715.1

Gene names

Name:	holB EMBL ABV60715.1
Ordered Locus Names:	BPUM_0015

Organism

Bacillus pumilus (strain SAFR-032) [Complete proteome] [HAMAP]

Taxonomic identifier

315750 [NCBI]

Taxonomic lineage

Bacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus

Protein attributes

Sequence length	329 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	DNA-directed DNA polymerase EMBL ABV60715.1 Nucleotidyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA replication Inferred from electronic annotation. Source: InterPro
Molecular function	3'-5' exonuclease activity Inferred from electronic annotation. Source: InterPro DNA-directed DNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8F8Z8 [UniParc]. Last modified November 13, 2007. Version 1. Checksum: E63082CE87326D0F	FASTA	329	37,881
	10 20 30 40 50 60 MAISWDDMND LQPRVMRLIF NSIDKDRLAH AYLFEGKKGT GKQDAAMLLA KSFFCLESGV 70 80 90 100 110 120 KPCESCQNCK RIESGNHPDL HLMQPDGQSI KKAQVQALQE EFTKAGVESH RKMYIILHAD 130 140 150 160 170 180 KMTVNAANSL LKFLEEPNRE TMAILITEQS HKMLDTIISR CQMLSFQPLQ PQSLEQQLLQ 190 200 210 220 230 240 EGVSQHLARL LSNLTNNLAE ALELSRNDQF AESRAKVIKL YEVLHQRKEH AFFYIQDQWM 250 260 270 280 290 300 PFFKEKDLQE TGLDMLLFIY RDVLSIQIGN EDKVIYQDLF QTMKQHALHS TQQMVTNQIL 310 320 AVLEAKKRLQ SNVNAQGLME QLVLMLQEG

References

[1]

"Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032." Gioia J., Yerrapragada S., Qin X., Jiang H., Igboeli O.C., Muzny D., Dugan-Rocha S., Ding Y., Hawes A., Liu W., Perez L., Kovar C., Dinh H., Lee S., Nazareth L., Blyth P., Holder M., Buhay C. , Tirumalai M.R., Liu Y., Dasgupta I., Bokhetache L., Fujita M., Karouia F., Eswara Moorthy P., Siefert J., Uzman A., Buzumbo P., Verma A., Zwiya H., McWilliams B.D., Olowu A., Clinkenbeard K.D., Newcombe D., Golebiewski L., Petrosino J.F., Nicholson W.L., Fox G.E., Venkateswaran K., Highlander S.K., Weinstock G.M. PLoS ONE 2:E928-E928(2007) [PubMed: 17895969] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000813 Genomic DNA. Translation: ABV60715.1.
RefSeq	YP_001485275.1. NC_009848.1.
3D structure databases
ProteinModelPortal	A8F8Z8.
ModBase	Search...
Protein-protein interaction databases
STRING	A8F8Z8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBBACT00000065530; EBBACP00000063863; EBBACG00000065521.
GeneID	5619228.
GenomeReviews	Gene locus BPUM_0015 in contig CP000813_GR.
KEGG	bpu:BPUM_0015.
PATRIC	18963733. VBIBacPum16546_0015.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0470.
GeneTree	EBGT00050000000361.
HOGENOM	HBG729459.
OMA	LMEQLVL.
ProtClustDB	PRK08058.
Family and domain databases
InterPro	IPR004622. DNA_pol_HolB. [Graphical view]
KO	K02341.
TIGRFAMs	TIGR00678. HolB. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A8F8Z8_BACP2

Accession

Primary (citable) accession number: A8F8Z8

Entry history

Integrated into UniProtKB/TrEMBL:	November 13, 2007
Last sequence update:	November 13, 2007
Last modified:	December 14, 2011
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)