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A8F2Y7 (A8F2Y7_RICM5) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Pseudouridine synthase RuleBase RU003886

EC=5.4.99.- RuleBase RU003886
Gene names
Ordered Locus Names:RMA_1333 EMBL ABV85273.1
OrganismRickettsia massiliae (strain Mtu5) [Complete proteome] [HAMAP] EMBL ABV85273.1
Taxonomic identifier416276 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group

Protein attributes

Sequence length313 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
   Molecular functionIsomerase RuleBase RU003886
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processpseudouridine synthesis

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

pseudouridine synthase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A8F2Y7 [UniParc].

Last modified November 13, 2007. Version 1.
Checksum: 244F36EFA0F7A431

FASTA31335,320
        10         20         30         40         50         60 
MLKYSVPHEL NDIRLDKALS SLLENVSRNQ IQKAIKDSQV LVNDVIISDP DVLVKENDII 

        70         80         90        100        110        120 
LFSFKEPEEL KIAAANVALD IIYEDDDLIV INKAAGMTVH PGAGHHDDTL VNALLHHTKN 

       130        140        150        160        170        180 
LSDIGSSERP GIVHRLDKDT TGLMVVAKNN KAHMLLANQI EQRQVIRKYK VLVWGVINPL 

       190        200        210        220        230        240 
EGVIKNNIGR SRSDRQKMTI LKYGGKEAVT HYKTLELFYK GSISMVECKL STGRTHQIRV 

       250        260        270        280        290        300 
QLSHLKHSVV GDQTYGNNDR KIAHSPPELK AKLIDFKRQA LHSWYLSFTH PTSNEIMAFS 

       310 
CKLPRDMEEI ISL 

« Hide

References

[1]"Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome."
Blanc G., Ogata H., Robert C., Audic S., Claverie J.M., Raoult D.
Genome Res. 17:1657-1664(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Mtu5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000683 Genomic DNA. Translation: ABV85273.1.
RefSeqYP_001499820.1. NC_009900.1.

3D structure databases

ProteinModelPortalA8F2Y7.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING416276.RMA_1333.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABV85273; ABV85273; RMA_1333.
GeneID5665707.
KEGGrms:RMA_1333.
PATRIC17897370. VBIRicMas83254_1645.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0564.
HOGENOMHOG000275919.
KOK06180.
OMARDIVHGG.
OrthoDBEOG6P070X.

Enzyme and pathway databases

BioCycRMAS416276:GJD3-1364-MONOMER.

Family and domain databases

Gene3D3.10.290.10. 1 hit.
InterProIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
TIGRFAMsTIGR00005. rluA_subfam. 1 hit.
PROSITEPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA8F2Y7_RICM5
AccessionPrimary (citable) accession number: A8F2Y7
Entry history
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: May 14, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)