A8F2Y7 (A8F2Y7_RICM5) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

RMA_1333 EMBL ABV85273.1

Organism

Rickettsia massiliae (strain Mtu5) [Complete proteome] [HAMAP] EMBL ABV85273.1

Taxonomic identifier

416276 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › spotted fever group › Rickettsia massiliae

Protein attributes

Sequence length	313 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A8F2Y7 [UniParc]. Last modified November 13, 2007. Version 1. Checksum: 244F36EFA0F7A431	FASTA	313	35,320
	10 20 30 40 50 60 MLKYSVPHEL NDIRLDKALS SLLENVSRNQ IQKAIKDSQV LVNDVIISDP DVLVKENDII 70 80 90 100 110 120 LFSFKEPEEL KIAAANVALD IIYEDDDLIV INKAAGMTVH PGAGHHDDTL VNALLHHTKN 130 140 150 160 170 180 LSDIGSSERP GIVHRLDKDT TGLMVVAKNN KAHMLLANQI EQRQVIRKYK VLVWGVINPL 190 200 210 220 230 240 EGVIKNNIGR SRSDRQKMTI LKYGGKEAVT HYKTLELFYK GSISMVECKL STGRTHQIRV 250 260 270 280 290 300 QLSHLKHSVV GDQTYGNNDR KIAHSPPELK AKLIDFKRQA LHSWYLSFTH PTSNEIMAFS 310 CKLPRDMEEI ISL

References

[1]

"Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome." Blanc G., Ogata H., Robert C., Audic S., Claverie J.M., Raoult D. Genome Res. 17:1657-1664(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Mtu5.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000683 Genomic DNA. Translation: ABV85273.1.
RefSeq	YP_001499820.1. NC_009900.1.
3D structure databases
ProteinModelPortal	A8F2Y7.
ModBase	Search...
Protein-protein interaction databases
STRING	416276.RMA_1333.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABV85273; ABV85273; RMA_1333.
GeneID	5665707.
KEGG	rms:RMA_1333.
PATRIC	17897370. VBIRicMas83254_1645.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0564.
HOGENOM	HOG000275919.
KO	K06180.
OMA	YEDEMIL.
ProtClustDB	CLSK871108.
Enzyme and pathway databases
BioCyc	RMAS416276:GJD3-1364-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006225. PsdUridine_synth_RluC/D. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00005. rluA_subfam. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A8F2Y7_RICM5

Accession

Primary (citable) accession number: A8F2Y7

Entry history

Integrated into UniProtKB/TrEMBL:	November 13, 2007
Last sequence update:	November 13, 2007
Last modified:	May 1, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)