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Protein

Pseudouridine synthase

Gene

RMA_1333

Organism
Rickettsia massiliae (strain Mtu5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. pseudouridine synthase activity Source: InterPro
  2. RNA binding Source: InterPro

GO - Biological processi

  1. pseudouridine synthesis Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

IsomeraseUniRule annotation

Enzyme and pathway databases

BioCyciRMAS416276:GJD3-1364-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Pseudouridine synthaseUniRule annotation (EC:5.4.99.-UniRule annotation)
Gene namesi
Ordered Locus Names:RMA_1333Imported
OrganismiRickettsia massiliae (strain Mtu5)Imported
Taxonomic identifieri416276 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
ProteomesiUP000001311: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi416276.RMA_1333.

Family & Domainsi

Sequence similaritiesi

Belongs to the pseudouridine synthase rluA family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0564.
HOGENOMiHOG000275919.
KOiK06180.
OMAiPSITHYE.
OrthoDBiEOG6P070X.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8F2Y7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKYSVPHEL NDIRLDKALS SLLENVSRNQ IQKAIKDSQV LVNDVIISDP
60 70 80 90 100
DVLVKENDII LFSFKEPEEL KIAAANVALD IIYEDDDLIV INKAAGMTVH
110 120 130 140 150
PGAGHHDDTL VNALLHHTKN LSDIGSSERP GIVHRLDKDT TGLMVVAKNN
160 170 180 190 200
KAHMLLANQI EQRQVIRKYK VLVWGVINPL EGVIKNNIGR SRSDRQKMTI
210 220 230 240 250
LKYGGKEAVT HYKTLELFYK GSISMVECKL STGRTHQIRV QLSHLKHSVV
260 270 280 290 300
GDQTYGNNDR KIAHSPPELK AKLIDFKRQA LHSWYLSFTH PTSNEIMAFS
310
CKLPRDMEEI ISL
Length:313
Mass (Da):35,320
Last modified:November 13, 2007 - v1
Checksum:i244F36EFA0F7A431
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000683 Genomic DNA. Translation: ABV85273.1.
RefSeqiYP_001499820.1. NC_009900.1.

Genome annotation databases

EnsemblBacteriaiABV85273; ABV85273; RMA_1333.
GeneIDi5665707.
KEGGirms:RMA_1333.
PATRICi17897370. VBIRicMas83254_1645.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000683 Genomic DNA. Translation: ABV85273.1.
RefSeqiYP_001499820.1. NC_009900.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi416276.RMA_1333.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABV85273; ABV85273; RMA_1333.
GeneIDi5665707.
KEGGirms:RMA_1333.
PATRICi17897370. VBIRicMas83254_1645.

Phylogenomic databases

eggNOGiCOG0564.
HOGENOMiHOG000275919.
KOiK06180.
OMAiPSITHYE.
OrthoDBiEOG6P070X.

Enzyme and pathway databases

BioCyciRMAS416276:GJD3-1364-MONOMER.

Family and domain databases

Gene3Di3.10.290.10. 1 hit.
InterProiIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamiPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
SUPFAMiSSF55120. SSF55120. 1 hit.
TIGRFAMsiTIGR00005. rluA_subfam. 1 hit.
PROSITEiPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome."
    Blanc G., Ogata H., Robert C., Audic S., Claverie J.-M., Raoult D.
    Genome Res. 17:1657-1664(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Mtu5Imported.

Entry informationi

Entry nameiA8F2Y7_RICM5
AccessioniPrimary (citable) accession number: A8F2Y7
Entry historyi
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: March 4, 2015
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.