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Protein
Submitted name:

ELAV-Type RNA binding-protein family

Gene

etr-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
ELAV-Type RNA binding-protein familyImported
Gene namesi
Name:etr-1Imported
ORF Names:CELE_T01D1.2Imported, T01D1.2Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiT01D1.2f; CE41585; WBGene00001340; etr-1.

Subcellular locationi

GO - Cellular componenti

  • nucleus Source: WormBase
Complete GO annotation...

PTM / Processingi

Proteomic databases

EPDiA8DYS0.
PaxDbiA8DYS0.

Expressioni

Gene expression databases

ExpressionAtlasiA8DYS0. baseline.

Interactioni

Protein-protein interaction databases

IntActiA8DYS0. 1 interaction.
STRINGi6239.T01D1.2f.5.

Structurei

3D structure databases

ProteinModelPortaliA8DYS0.
SMRiA8DYS0. Positions 52-221, 499-579.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini55 – 13682RRM (RNA recognition motif)InterPro annotationAdd
BLAST
Domaini142 – 22281RRM (RNA recognition motif)InterPro annotationAdd
BLAST
Domaini503 – 58179RRM (RNA recognition motif)InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0144. Eukaryota.
ENOG410XNTW. LUCA.
GeneTreeiENSGT00560000076837.
HOGENOMiHOG000004754.
InParanoidiA8DYS0.
PhylomeDBiA8DYS0.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 3 hits.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8DYS0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGAVLPAVL VVPKMESVVV PIAESTVINA KDTTPSTAAD NDVSPSPSEP
60 70 80 90 100
DTDAIKMFVG QIPRQWNETD CRRLFEKYGS VFSCNILRDK STQASKGCCF
110 120 130 140 150
VTFYHRKDAI EAQGALHNIK VIEGMHHPVQ MKPADTENRN ERKLFIGQLS
160 170 180 190 200
KKHNEENLRE IFAKFGHIED CSVLRDQDGK SRGCAFVTFT NRSCAVVATK
210 220 230 240 250
EMHHSQTMEG CSAPLVVKFA DTQKDKDVKT KSMITGSGAG SPKGGAASLL
260 270 280 290 300
QNLNPALLQQ LGGGQNYQAV ASLLSLINGQ QGQQQQHQQQ QNVLGILGTG
310 320 330 340 350
NPLLGNPAMA AQNQFDAITM AQIAHQQQML ALQGFAVQQG APSQQQQGLF
360 370 380 390 400
LAHQYSTNYS TGSPDSASNA TDSSSDDNNV MNNRLTPTSK MAQYGYGPLI
410 420 430 440 450
PRHPAQLYLQ QRFPATAAAY VPGLAGGMAG AKTTSPVAAS LANHQQIALT
460 470 480 490 500
PFAGGAAALD HFQAMQQYAL LANLQATGGV GVQATTSAAQ MVGNGDVKGP
510 520 530 540 550
DGANLFIYHL PQDFGDSDLI NTFAPFGGIL SAKVFIDKVT NLSKCFGFVS
560 570 580
YENAQSATNA ISAMNGFQIG SKRLKVQLKV DRGNPYNR
Length:588
Mass (Da):62,868
Last modified:November 13, 2007 - v1
Checksum:iB51345CC29475A52
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD71502.1.
RefSeqiNP_001122631.1. NM_001129159.2.
UniGeneiCel.5079.

Genome annotation databases

EnsemblMetazoaiT01D1.2f.1; T01D1.2f.1; WBGene00001340.
T01D1.2f.2; T01D1.2f.2; WBGene00001340.
T01D1.2f.3; T01D1.2f.3; WBGene00001340.
T01D1.2f.4; T01D1.2f.4; WBGene00001340.
T01D1.2f.5; T01D1.2f.5; WBGene00001340.
GeneIDi173401.
UCSCiT01D1.2a.1. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD71502.1.
RefSeqiNP_001122631.1. NM_001129159.2.
UniGeneiCel.5079.

3D structure databases

ProteinModelPortaliA8DYS0.
SMRiA8DYS0. Positions 52-221, 499-579.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiA8DYS0. 1 interaction.
STRINGi6239.T01D1.2f.5.

Proteomic databases

EPDiA8DYS0.
PaxDbiA8DYS0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiT01D1.2f.1; T01D1.2f.1; WBGene00001340.
T01D1.2f.2; T01D1.2f.2; WBGene00001340.
T01D1.2f.3; T01D1.2f.3; WBGene00001340.
T01D1.2f.4; T01D1.2f.4; WBGene00001340.
T01D1.2f.5; T01D1.2f.5; WBGene00001340.
GeneIDi173401.
UCSCiT01D1.2a.1. c. elegans.

Organism-specific databases

CTDi173401.
WormBaseiT01D1.2f; CE41585; WBGene00001340; etr-1.

Phylogenomic databases

eggNOGiKOG0144. Eukaryota.
ENOG410XNTW. LUCA.
GeneTreeiENSGT00560000076837.
HOGENOMiHOG000004754.
InParanoidiA8DYS0.
PhylomeDBiA8DYS0.

Gene expression databases

ExpressionAtlasiA8DYS0. baseline.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 3 hits.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    Caenorhabditis elegans Sequencing Consortium
    Sulson J.E., Waterston R.
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiA8DYS0_CAEEL
AccessioniPrimary (citable) accession number: A8DYS0
Entry historyi
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: June 8, 2016
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.