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Protein
Submitted name:

ELAV-Type RNA binding-protein family

Gene

etr-1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
ELAV-Type RNA binding-protein familyImported
Gene namesi
Name:etr-1Imported
ORF Names:CELE_T01D1.2Imported, T01D1.2Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiT01D1.2f; CE41585; WBGene00001340; etr-1.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

EPDiA8DYS0.
PaxDbiA8DYS0.

Expressioni

Gene expression databases

BgeeiWBGene00001340.
ExpressionAtlasiA8DYS0. baseline.

Interactioni

Protein-protein interaction databases

IntActiA8DYS0. 1 interactor.
STRINGi6239.T01D1.2f.5.

Structurei

3D structure databases

ProteinModelPortaliA8DYS0.
SMRiA8DYS0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini55 – 136RRMInterPro annotationAdd BLAST82
Domaini142 – 222RRMInterPro annotationAdd BLAST81
Domaini503 – 581RRMInterPro annotationAdd BLAST79

Phylogenomic databases

eggNOGiKOG0144. Eukaryota.
ENOG410XNTW. LUCA.
GeneTreeiENSGT00560000076837.
HOGENOMiHOG000004754.
InParanoidiA8DYS0.
OrthoDBiEOG091G19O1.
PhylomeDBiA8DYS0.

Family and domain databases

CDDicd12631. RRM1_CELF1_2_Bruno. 1 hit.
InterProiView protein in InterPro
IPR034196. CELF1/2_RRM1.
IPR000504. RRM_dom.
PfamiView protein in Pfam
PF00076. RRM_1. 3 hits.
SMARTiView protein in SMART
SM00360. RRM. 3 hits.
SUPFAMiSSF54928. SSF54928. 3 hits.
PROSITEiView protein in PROSITE
PS50102. RRM. 3 hits.

Sequencei

Sequence statusi: Complete.

A8DYS0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGAVLPAVL VVPKMESVVV PIAESTVINA KDTTPSTAAD NDVSPSPSEP
60 70 80 90 100
DTDAIKMFVG QIPRQWNETD CRRLFEKYGS VFSCNILRDK STQASKGCCF
110 120 130 140 150
VTFYHRKDAI EAQGALHNIK VIEGMHHPVQ MKPADTENRN ERKLFIGQLS
160 170 180 190 200
KKHNEENLRE IFAKFGHIED CSVLRDQDGK SRGCAFVTFT NRSCAVVATK
210 220 230 240 250
EMHHSQTMEG CSAPLVVKFA DTQKDKDVKT KSMITGSGAG SPKGGAASLL
260 270 280 290 300
QNLNPALLQQ LGGGQNYQAV ASLLSLINGQ QGQQQQHQQQ QNVLGILGTG
310 320 330 340 350
NPLLGNPAMA AQNQFDAITM AQIAHQQQML ALQGFAVQQG APSQQQQGLF
360 370 380 390 400
LAHQYSTNYS TGSPDSASNA TDSSSDDNNV MNNRLTPTSK MAQYGYGPLI
410 420 430 440 450
PRHPAQLYLQ QRFPATAAAY VPGLAGGMAG AKTTSPVAAS LANHQQIALT
460 470 480 490 500
PFAGGAAALD HFQAMQQYAL LANLQATGGV GVQATTSAAQ MVGNGDVKGP
510 520 530 540 550
DGANLFIYHL PQDFGDSDLI NTFAPFGGIL SAKVFIDKVT NLSKCFGFVS
560 570 580
YENAQSATNA ISAMNGFQIG SKRLKVQLKV DRGNPYNR
Length:588
Mass (Da):62,868
Last modified:November 13, 2007 - v1
Checksum:iB51345CC29475A52
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA. Translation: CCD71502.1.
RefSeqiNP_001122631.1. NM_001129159.2.
UniGeneiCel.5079.

Genome annotation databases

EnsemblMetazoaiT01D1.2f.1; T01D1.2f.1; WBGene00001340.
T01D1.2f.2; T01D1.2f.2; WBGene00001340.
T01D1.2f.3; T01D1.2f.3; WBGene00001340.
T01D1.2f.4; T01D1.2f.4; WBGene00001340.
T01D1.2f.5; T01D1.2f.5; WBGene00001340.
GeneIDi173401.
UCSCiT01D1.2a.1. c. elegans.

Similar proteinsi

Entry informationi

Entry nameiA8DYS0_CAEEL
AccessioniPrimary (citable) accession number: A8DYS0
Entry historyiIntegrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: September 27, 2017
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported