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Protein

Ribulose bisphosphate carboxylase large chain

Gene

rbcL

Organism
Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotation
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotation

Cofactori

Mg2+UniRule annotationNote: Binds 1 Mg2+ ion per subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation, MonooxygenaseUniRule annotation, Oxidoreductase

Keywords - Biological processi

Calvin cycleUniRule annotation, Carbon dioxide fixationUniRule annotation, PhotorespirationUniRule annotation, PhotosynthesisUniRule annotation

Keywords - Ligandi

MagnesiumUniRule annotation, Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase large chainUniRule annotation (EC:4.1.1.39UniRule annotation)
Gene namesi
Name:rbcLImported
Synonyms:RBLImported
ORF Names:THAPSDRAFT_bd2088Imported
Encoded oniPlastid; ChloroplastImported
OrganismiThalassiosira pseudonana (Marine diatom) (Cyclotella nana)Imported
Taxonomic identifieri35128 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira
Proteomesi
  • UP000001449 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Plastidchloroplast UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei264 – 28724HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

ChloroplastUniRule annotationImported, Membrane, Plastid

Interactioni

Subunit structurei

Heterohexadecamer of 8 large chains and 8 small chains.UniRule annotation

Protein-protein interaction databases

STRINGi35128.Thapsdraft2088.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini28 – 148121RuBisCO_large_NInterPro annotationAdd
BLAST
Domaini158 – 467310RuBisCO_largeInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RuBisCO large chain family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IIVP. Eukaryota.
COG1850. LUCA.
KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1. 1 hit.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

A8DP56-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQSVSERTR IKSDRYESGV IPYAKMGYWD AAYTVKDTDV LALFRITPQP
60 70 80 90 100
GVDPVEAAAA VAGESSTATW TVVWTDLLTA CERYRAKAYR VDPVPSATDQ
110 120 130 140 150
YFAFIAYECD LFEEASLSNL TASIIGNVFG FKAISALRLE DMRIPHSYLK
160 170 180 190 200
TFQGPATGIV VERERLNKYG TPLLGATVKP KLGLSGKNYG RVVYEGLKGG
210 220 230 240 250
LDFLKDDENI NSQPFMRWRE RFLNCLEGIN RASAATGEVK GSYLNITAAT
260 270 280 290 300
MEEVYKRAEY AKMIGSVIVM IDLVMGYTAI QSIAYWAREN DMLLHLHRAG
310 320 330 340 350
NSTYARQKNH GINFRVICKW MRMSGVDHIH AGTVVGKLEG DPLMIKGFYD
360 370 380 390 400
ILRLTELEVN LPFGIFFEMD WASLRRCMPV ASGGIHCGQM HQLIHYLGDD
410 420 430 440 450
VVLQFGGGTI GHPDGIQAGA TANRVALEAM VLARNEGLDY FNQQVGPQIL
460 470 480 490
RDAAKTCGPL QTALDLWKDI SFNYTSTDTA DFAETATANR
Length:490
Mass (Da):54,324
Last modified:November 13, 2007 - v1
Checksum:iA8FBC8583F358EBE
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ514784 Genomic DNA. Translation: ABF60342.1.
HQ912419 Genomic DNA. Translation: AEB91175.1.
DS999447 Genomic DNA. Translation: EED86158.1.
RefSeqiXP_002297518.1. XM_002297482.1.
YP_874498.1. NC_008589.1.

Genome annotation databases

EnsemblProtistsiThapsdraft2088; Thapsdraft2088; Thapsdraft2088.
GeneIDi4524793.
7447414.
KEGGitps:THAPSDRAFT_bd2088.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ514784 Genomic DNA. Translation: ABF60342.1.
HQ912419 Genomic DNA. Translation: AEB91175.1.
DS999447 Genomic DNA. Translation: EED86158.1.
RefSeqiXP_002297518.1. XM_002297482.1.
YP_874498.1. NC_008589.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi35128.Thapsdraft2088.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiThapsdraft2088; Thapsdraft2088; Thapsdraft2088.
GeneIDi4524793.
7447414.
KEGGitps:THAPSDRAFT_bd2088.

Phylogenomic databases

eggNOGiENOG410IIVP. Eukaryota.
COG1850. LUCA.
KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1. 1 hit.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiA8DP56_THAPS
AccessioniPrimary (citable) accession number: A8DP56
Secondary accession number(s): B8LER9
Entry historyi
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: September 7, 2016
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.