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A8DP56 (A8DP56_THAPS) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names

Ribulose-bisphosphate carboxylase, large subunit or chain, chloroplast, RuBisCo EMBL EED86158.1
Gene names
Name:rbcL EMBL ABF60342.1
Synonyms:RBL EMBL EED86158.1
ORF Names:THAPSDRAFT_bd2088 EMBL EED86158.1
Encoded onPlastid; Chloroplast EMBL ABF60342.1
OrganismThalassiosira pseudonana (Marine diatom) (Cyclotella nana) [Reference proteome] EMBL ABF60342.1
Taxonomic identifier35128 [NCBI]
Taxonomic lineageEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira

Protein attributes

Sequence length490 AA.
Sequence statusFragment.
Protein existenceInferred from homology

General annotation (Comments)

Subcellular location

Plastidchloroplast By similarity RuleBase RU000303.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL ABF60342.1

Sequences

Sequence LengthMass (Da)Tools
A8DP56 [UniParc].

Last modified November 13, 2007. Version 1.
Checksum: A8FBC8583F358EBE

FASTA49054,324
        10         20         30         40         50         60 
MSQSVSERTR IKSDRYESGV IPYAKMGYWD AAYTVKDTDV LALFRITPQP GVDPVEAAAA 

        70         80         90        100        110        120 
VAGESSTATW TVVWTDLLTA CERYRAKAYR VDPVPSATDQ YFAFIAYECD LFEEASLSNL 

       130        140        150        160        170        180 
TASIIGNVFG FKAISALRLE DMRIPHSYLK TFQGPATGIV VERERLNKYG TPLLGATVKP 

       190        200        210        220        230        240 
KLGLSGKNYG RVVYEGLKGG LDFLKDDENI NSQPFMRWRE RFLNCLEGIN RASAATGEVK 

       250        260        270        280        290        300 
GSYLNITAAT MEEVYKRAEY AKMIGSVIVM IDLVMGYTAI QSIAYWAREN DMLLHLHRAG 

       310        320        330        340        350        360 
NSTYARQKNH GINFRVICKW MRMSGVDHIH AGTVVGKLEG DPLMIKGFYD ILRLTELEVN 

       370        380        390        400        410        420 
LPFGIFFEMD WASLRRCMPV ASGGIHCGQM HQLIHYLGDD VVLQFGGGTI GHPDGIQAGA 

       430        440        450        460        470        480 
TANRVALEAM VLARNEGLDY FNQQVGPQIL RDAAKTCGPL QTALDLWKDI SFNYTSTDTA 

       490 
DFAETATANR 

« Hide

References

« Hide 'large scale' references
[1]"The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism."
Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D., Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A., Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C., Glavina T., Goodstein D. expand/collapse author list , Hadi M.Z., Hellsten U., Hildebrand M., Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W., Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M., Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A., Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A., Wilkerson F.P., Rokhsar D.S.
Science 306:79-86(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CCMP1335 EMBL EED86158.1.
[2]"Bridging the Rubicon: phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms."
Alverson A.J., Jansen R.K., Theriot E.C.
Mol. Phylogenet. Evol. 45:193-210(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: NEPC709 EMBL ABF60342.1.
[3]"The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T. expand/collapse author list , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: CCMP1335 EMBL EED86158.1.
[4]Diatom Consortium
Grigoriev I., Grimwood J., Kuo A., Otillar R.P., Salamov A., Detter J.C., Schmutz J., Lindquist E., Shapiro H., Lucas S., Glavina del Rio T., Bruce D., Pitluck S., Rokhsar D., Armbrust V.
Submitted (SEP-2008) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: CCMP1335 EMBL EED86158.1.
[5]"A preliminary multigene phylogeny of the diatoms (Bacillariophyta): challenges for future research."
Theriot E.C., Ashworth M., Ruck E., Nakov T., Jansen R.K.
Plant Ecol Evol 143:278-296(2010)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: CCMP1335 EMBL AEB91175.1.
[6]Theriot E.C., Ashworth M., Ruck E.C., Nakov T., Jansen R.K.
Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: CCMP1335 EMBL AEB91175.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DQ514784 Genomic DNA. Translation: ABF60342.1.
HQ912419 Genomic DNA. Translation: AEB91175.1.
DS999447 Genomic DNA. Translation: EED86158.1.
RefSeqXP_002297518.1. XM_002297482.1.
YP_874498.1. NC_008589.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING35128.JGI2088B.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsThapsdraft2088; Thapsdraft2088; Thapsdraft2088.
GeneID4524793.
7447414.
KEGGtps:THAPSDRAFT_bd2088.

Phylogenomic databases

KOK01601.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPMF_01338. RuBisCO_L_type1.
InterProIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA8DP56_THAPS
AccessionPrimary (citable) accession number: A8DP56
Secondary accession number(s): B8LER9
Entry history
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: July 9, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)