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A8DP56

- A8DP56_THAPS

UniProt

A8DP56 - A8DP56_THAPS

Protein
Submitted name:

Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit

Gene

rbcL

Organism
Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 43 (01 Oct 2014)
      Sequence version 1 (13 Nov 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. magnesium ion binding Source: InterPro
    2. ribulose-bisphosphate carboxylase activity Source: InterPro

    GO - Biological processi

    1. carbon fixation Source: InterPro
    2. photosynthesis Source: UniProtKB-KW

    Keywords - Biological processi

    PhotosynthesisUniRule annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunitImported
    Submitted name:
    Ribulose-bisphosphate carboxylase, large subunit or chain, chloroplast, RuBisCoImported
    Gene namesi
    Name:rbcLImported
    Synonyms:RBLImported
    ORF Names:THAPSDRAFT_bd2088Imported
    Encoded oniPlastid; ChloroplastImported
    OrganismiThalassiosira pseudonana (Marine diatom) (Cyclotella nana)Imported
    Taxonomic identifieri35128 [NCBI]
    Taxonomic lineageiEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira
    ProteomesiUP000001449: Unassembled WGS sequence

    Subcellular locationi

    Plastidchloroplast UniRule annotation

    GO - Cellular componenti

    1. chloroplast Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    ChloroplastUniRule annotationImported, Plastid

    Interactioni

    Protein-protein interaction databases

    STRINGi35128.JGI2088B.

    Family & Domainsi

    Phylogenomic databases

    KOiK01601.

    Family and domain databases

    Gene3Di3.20.20.110. 1 hit.
    3.30.70.150. 1 hit.
    HAMAPiMF_01338. RuBisCO_L_type1.
    InterProiIPR020878. RuBisCo_large_chain_AS.
    IPR020888. RuBisCO_lsu.
    IPR000685. RuBisCO_lsu_C.
    IPR017443. RuBisCO_lsu_fd_N.
    IPR017444. RuBisCO_lsu_N.
    [Graphical view]
    PfamiPF00016. RuBisCO_large. 1 hit.
    PF02788. RuBisCO_large_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF51649. SSF51649. 1 hit.
    SSF54966. SSF54966. 1 hit.
    PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Fragment.

    A8DP56-1 [UniParc]FASTAAdd to Basket

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    MSQSVSERTR IKSDRYESGV IPYAKMGYWD AAYTVKDTDV LALFRITPQP    50
    GVDPVEAAAA VAGESSTATW TVVWTDLLTA CERYRAKAYR VDPVPSATDQ 100
    YFAFIAYECD LFEEASLSNL TASIIGNVFG FKAISALRLE DMRIPHSYLK 150
    TFQGPATGIV VERERLNKYG TPLLGATVKP KLGLSGKNYG RVVYEGLKGG 200
    LDFLKDDENI NSQPFMRWRE RFLNCLEGIN RASAATGEVK GSYLNITAAT 250
    MEEVYKRAEY AKMIGSVIVM IDLVMGYTAI QSIAYWAREN DMLLHLHRAG 300
    NSTYARQKNH GINFRVICKW MRMSGVDHIH AGTVVGKLEG DPLMIKGFYD 350
    ILRLTELEVN LPFGIFFEMD WASLRRCMPV ASGGIHCGQM HQLIHYLGDD 400
    VVLQFGGGTI GHPDGIQAGA TANRVALEAM VLARNEGLDY FNQQVGPQIL 450
    RDAAKTCGPL QTALDLWKDI SFNYTSTDTA DFAETATANR 490
    Length:490
    Mass (Da):54,324
    Last modified:November 13, 2007 - v1
    Checksum:iA8FBC8583F358EBE
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DQ514784 Genomic DNA. Translation: ABF60342.1.
    HQ912419 Genomic DNA. Translation: AEB91175.1.
    DS999447 Genomic DNA. Translation: EED86158.1.
    RefSeqiXP_002297518.1. XM_002297482.1.
    YP_874498.1. NC_008589.1.

    Genome annotation databases

    EnsemblProtistsiThapsdraft2088; Thapsdraft2088; Thapsdraft2088.
    GeneIDi4524793.
    7447414.
    KEGGitps:THAPSDRAFT_bd2088.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DQ514784 Genomic DNA. Translation: ABF60342.1 .
    HQ912419 Genomic DNA. Translation: AEB91175.1 .
    DS999447 Genomic DNA. Translation: EED86158.1 .
    RefSeqi XP_002297518.1. XM_002297482.1.
    YP_874498.1. NC_008589.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 35128.JGI2088B.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblProtistsi Thapsdraft2088 ; Thapsdraft2088 ; Thapsdraft2088 .
    GeneIDi 4524793.
    7447414.
    KEGGi tps:THAPSDRAFT_bd2088.

    Phylogenomic databases

    KOi K01601.

    Family and domain databases

    Gene3Di 3.20.20.110. 1 hit.
    3.30.70.150. 1 hit.
    HAMAPi MF_01338. RuBisCO_L_type1.
    InterProi IPR020878. RuBisCo_large_chain_AS.
    IPR020888. RuBisCO_lsu.
    IPR000685. RuBisCO_lsu_C.
    IPR017443. RuBisCO_lsu_fd_N.
    IPR017444. RuBisCO_lsu_N.
    [Graphical view ]
    Pfami PF00016. RuBisCO_large. 1 hit.
    PF02788. RuBisCO_large_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51649. SSF51649. 1 hit.
    SSF54966. SSF54966. 1 hit.
    PROSITEi PS00157. RUBISCO_LARGE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CCMP1335Imported.
    2. "Bridging the Rubicon: phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms."
      Alverson A.J., Jansen R.K., Theriot E.C.
      Mol. Phylogenet. Evol. 45:193-210(2007) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: NEPC709Imported.
    3. "The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
      Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.
      , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
      Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: CCMP1335Imported.
    4. Cited for: GENOME REANNOTATION.
      Strain: CCMP1335Imported.
    5. "A preliminary multigene phylogeny of the diatoms (Bacillariophyta): challenges for future research."
      Theriot E.C., Ashworth M., Ruck E., Nakov T., Jansen R.K.
      Plant Ecol Evol 143:278-296(2010)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: CCMP1335Imported.
    6. Theriot E.C., Ashworth M., Ruck E.C., Nakov T., Jansen R.K.
      Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: CCMP1335Imported.

    Entry informationi

    Entry nameiA8DP56_THAPS
    AccessioniPrimary (citable) accession number: A8DP56
    Secondary accession number(s): B8LER9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 13, 2007
    Last sequence update: November 13, 2007
    Last modified: October 1, 2014
    This is version 43 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3