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Protein

Ribulose bisphosphate carboxylase large chain

Gene

rbcL

Organism
Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotation
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotation

Cofactori

Mg2+UniRule annotationNote: Binds 1 Mg2+ ion per subunit.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLyaseUniRule annotation, MonooxygenaseUniRule annotation, Oxidoreductase
Biological processCalvin cycleUniRule annotation, Carbon dioxide fixationUniRule annotation, PhotorespirationUniRule annotation, PhotosynthesisUniRule annotation
LigandMagnesiumUniRule annotation, Metal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase large chainUniRule annotation (EC:4.1.1.39UniRule annotation)
Gene namesi
Name:rbcLImported
Synonyms:RBLImported
ORF Names:THAPSDRAFT_bd2088Imported
Encoded oniPlastid; ChloroplastImported
OrganismiThalassiosira pseudonana (Marine diatom) (Cyclotella nana)Imported
Taxonomic identifieri35128 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira
Proteomesi
  • UP000001449 Componenti: Unassembled WGS sequence

Subcellular locationi

  • chloroplast UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei264 – 287HelicalSequence analysisAdd BLAST24

GO - Cellular componenti

Keywords - Cellular componenti

ChloroplastUniRule annotationImported, Membrane, Plastid

Interactioni

Subunit structurei

Heterohexadecamer of 8 large chains and 8 small chains.UniRule annotation

Structurei

3D structure databases

SMRiA8DP56
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini28 – 148RuBisCO_large_NInterPro annotationAdd BLAST121
Domaini158 – 467RuBisCO_largeInterPro annotationAdd BLAST310

Sequence similaritiesi

Belongs to the RuBisCO large chain family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IIVP Eukaryota
COG1850 LUCA
KOiK01601
OMAiHRAMHAA

Family and domain databases

CDDicd08212 RuBisCO_large_I, 1 hit
Gene3Di3.20.20.110, 1 hit
3.30.70.150, 1 hit
HAMAPiMF_01338 RuBisCO_L_type1, 1 hit
InterProiView protein in InterPro
IPR033966 RuBisCO
IPR020878 RuBisCo_large_chain_AS
IPR000685 RuBisCO_lsu_C
IPR036376 RuBisCO_lsu_C_sf
IPR017443 RuBisCO_lsu_fd_N
IPR036422 RuBisCO_lsu_N_sf
IPR020888 RuBisCO_lsuI
PfamiView protein in Pfam
PF00016 RuBisCO_large, 1 hit
PF02788 RuBisCO_large_N, 1 hit
SFLDiSFLDS00014 RuBisCO, 1 hit
SUPFAMiSSF51649 SSF51649, 1 hit
SSF54966 SSF54966, 1 hit
PROSITEiView protein in PROSITE
PS00157 RUBISCO_LARGE, 1 hit

Sequencei

Sequence statusi: Fragment.

A8DP56-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQSVSERTR IKSDRYESGV IPYAKMGYWD AAYTVKDTDV LALFRITPQP
60 70 80 90 100
GVDPVEAAAA VAGESSTATW TVVWTDLLTA CERYRAKAYR VDPVPSATDQ
110 120 130 140 150
YFAFIAYECD LFEEASLSNL TASIIGNVFG FKAISALRLE DMRIPHSYLK
160 170 180 190 200
TFQGPATGIV VERERLNKYG TPLLGATVKP KLGLSGKNYG RVVYEGLKGG
210 220 230 240 250
LDFLKDDENI NSQPFMRWRE RFLNCLEGIN RASAATGEVK GSYLNITAAT
260 270 280 290 300
MEEVYKRAEY AKMIGSVIVM IDLVMGYTAI QSIAYWAREN DMLLHLHRAG
310 320 330 340 350
NSTYARQKNH GINFRVICKW MRMSGVDHIH AGTVVGKLEG DPLMIKGFYD
360 370 380 390 400
ILRLTELEVN LPFGIFFEMD WASLRRCMPV ASGGIHCGQM HQLIHYLGDD
410 420 430 440 450
VVLQFGGGTI GHPDGIQAGA TANRVALEAM VLARNEGLDY FNQQVGPQIL
460 470 480 490
RDAAKTCGPL QTALDLWKDI SFNYTSTDTA DFAETATANR
Length:490
Mass (Da):54,324
Last modified:November 13, 2007 - v1
Checksum:iA8FBC8583F358EBE
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ514784 Genomic DNA Translation: ABF60342.1
HQ912419 Genomic DNA Translation: AEB91175.1
DS999447 Genomic DNA Translation: EED86158.1
RefSeqiXP_002297518.1, XM_002297482.1
YP_874498.1, NC_008589.1

Genome annotation databases

EnsemblProtistsiEED86158; EED86158; THAPSDRAFT_bd2088
GeneIDi4524793
7447414
KEGGitps:THAPSDRAFT_bd2088

Similar proteinsi

Entry informationi

Entry nameiA8DP56_THAPS
AccessioniPrimary (citable) accession number: A8DP56
Secondary accession number(s): B8LER9
Entry historyiIntegrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: March 28, 2018
This is version 67 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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