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A8DP56

- A8DP56_THAPS

UniProt

A8DP56 - A8DP56_THAPS

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Protein
Submitted name:

Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit

Gene

rbcL

Organism
Thalassiosira pseudonana (Marine diatom) (Cyclotella nana)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. magnesium ion binding Source: InterPro
  2. ribulose-bisphosphate carboxylase activity Source: InterPro

GO - Biological processi

  1. carbon fixation Source: InterPro
  2. photosynthesis Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

PhotosynthesisUniRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunitImported
Submitted name:
Ribulose-bisphosphate carboxylase, large subunit or chain, chloroplast, RuBisCoImported
Gene namesi
Name:rbcLImported
Synonyms:RBLImported
ORF Names:THAPSDRAFT_bd2088Imported
Encoded oniPlastid; ChloroplastImported
OrganismiThalassiosira pseudonana (Marine diatom) (Cyclotella nana)Imported
Taxonomic identifieri35128 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesBacillariophytaCoscinodiscophyceaeThalassiosirophycidaeThalassiosiralesThalassiosiraceaeThalassiosira
ProteomesiUP000001449: Unassembled WGS sequence

Subcellular locationi

Plastidchloroplast UniRule annotation

GO - Cellular componenti

  1. chloroplast Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

ChloroplastUniRule annotationImported, Plastid

Interactioni

Protein-protein interaction databases

STRINGi35128.JGI2088B.

Structurei

3D structure databases

ProteinModelPortaliA8DP56.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01601.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

A8DP56-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSQSVSERTR IKSDRYESGV IPYAKMGYWD AAYTVKDTDV LALFRITPQP
60 70 80 90 100
GVDPVEAAAA VAGESSTATW TVVWTDLLTA CERYRAKAYR VDPVPSATDQ
110 120 130 140 150
YFAFIAYECD LFEEASLSNL TASIIGNVFG FKAISALRLE DMRIPHSYLK
160 170 180 190 200
TFQGPATGIV VERERLNKYG TPLLGATVKP KLGLSGKNYG RVVYEGLKGG
210 220 230 240 250
LDFLKDDENI NSQPFMRWRE RFLNCLEGIN RASAATGEVK GSYLNITAAT
260 270 280 290 300
MEEVYKRAEY AKMIGSVIVM IDLVMGYTAI QSIAYWAREN DMLLHLHRAG
310 320 330 340 350
NSTYARQKNH GINFRVICKW MRMSGVDHIH AGTVVGKLEG DPLMIKGFYD
360 370 380 390 400
ILRLTELEVN LPFGIFFEMD WASLRRCMPV ASGGIHCGQM HQLIHYLGDD
410 420 430 440 450
VVLQFGGGTI GHPDGIQAGA TANRVALEAM VLARNEGLDY FNQQVGPQIL
460 470 480 490
RDAAKTCGPL QTALDLWKDI SFNYTSTDTA DFAETATANR
Length:490
Mass (Da):54,324
Last modified:November 13, 2007 - v1
Checksum:iA8FBC8583F358EBE
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ514784 Genomic DNA. Translation: ABF60342.1.
HQ912419 Genomic DNA. Translation: AEB91175.1.
DS999447 Genomic DNA. Translation: EED86158.1.
RefSeqiXP_002297518.1. XM_002297482.1.
YP_874498.1. NC_008589.1.

Genome annotation databases

EnsemblProtistsiThapsdraft2088; Thapsdraft2088; Thapsdraft2088.
GeneIDi4524793.
7447414.
KEGGitps:THAPSDRAFT_bd2088.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ514784 Genomic DNA. Translation: ABF60342.1 .
HQ912419 Genomic DNA. Translation: AEB91175.1 .
DS999447 Genomic DNA. Translation: EED86158.1 .
RefSeqi XP_002297518.1. XM_002297482.1.
YP_874498.1. NC_008589.1.

3D structure databases

ProteinModelPortali A8DP56.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 35128.JGI2088B.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblProtistsi Thapsdraft2088 ; Thapsdraft2088 ; Thapsdraft2088 .
GeneIDi 4524793.
7447414.
KEGGi tps:THAPSDRAFT_bd2088.

Phylogenomic databases

KOi K01601.

Family and domain databases

Gene3Di 3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPi MF_01338. RuBisCO_L_type1.
InterProi IPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view ]
Pfami PF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view ]
SUPFAMi SSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEi PS00157. RUBISCO_LARGE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: CCMP1335Imported.
  2. "Bridging the Rubicon: phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms."
    Alverson A.J., Jansen R.K., Theriot E.C.
    Mol. Phylogenet. Evol. 45:193-210(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: NEPC709Imported.
  3. "The Phaeodactylum genome reveals the evolutionary history of diatom genomes."
    Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A., Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.
    , Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P., Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C., Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D., Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G., La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J., Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A., Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L., Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A., Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R., Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S., Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y., Grigoriev I.V.
    Nature 456:239-244(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CCMP1335Imported.
  4. Cited for: GENOME REANNOTATION.
    Strain: CCMP1335Imported.
  5. "A preliminary multigene phylogeny of the diatoms (Bacillariophyta): challenges for future research."
    Theriot E.C., Ashworth M., Ruck E., Nakov T., Jansen R.K.
    Plant Ecol Evol 143:278-296(2010)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CCMP1335Imported.
  6. Theriot E.C., Ashworth M., Ruck E.C., Nakov T., Jansen R.K.
    Submitted (JAN-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: CCMP1335Imported.

Entry informationi

Entry nameiA8DP56_THAPS
AccessioniPrimary (citable) accession number: A8DP56
Secondary accession number(s): B8LER9
Entry historyi
Integrated into UniProtKB/TrEMBL: November 13, 2007
Last sequence update: November 13, 2007
Last modified: October 29, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3