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Protein

D-serine dehydratase

Gene

dsdA

Organism
Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-serine = pyruvate + NH3.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Pyridoxal phosphate

Names & Taxonomyi

Protein namesi
Recommended name:
D-serine dehydrataseUniRule annotation (EC:4.3.1.18UniRule annotation)
Alternative name(s):
D-serine deaminaseUniRule annotation
Short name:
DSDUniRule annotation
Gene namesi
Name:dsdAUniRule annotation
Ordered Locus Names:CKO_00021
OrganismiCitrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Taxonomic identifieri290338 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeCitrobacter
Proteomesi
  • UP000008148 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000637101 – 442D-serine dehydrataseAdd BLAST442

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei118N6-(pyridoxal phosphate)lysineUniRule annotation1

Proteomic databases

PRIDEiA8ACI7.

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi290338.CKO_00021.

Structurei

3D structure databases

ProteinModelPortaliA8ACI7.
SMRiA8ACI7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the serine/threonine dehydratase family. DsdA subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.
OrthoDBiPOG091H0G2T.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 3 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEiPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A8ACI7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MENAKMTSLI AQYPLVEDLI ALKETTWFNP GTTSLAEGLP YVGLTAQDVQ
60 70 80 90 100
DAHARLARFA PYLAKAFPET AATGGIIESE LAIIPAMQQR LEKEYGQKIS
110 120 130 140 150
GELLLKKDSH LPISGSIKAR GGIYEVLAHA EKLALEAGLL TTEDDYSVML
160 170 180 190 200
SPEFRQFFSQ YSIAVGSTGN LGLSIGIMSA CIGFKVTVHM SADARAWKKA
210 220 230 240 250
KLRSHGVTVV EYEEDYGVAV EQGRKAAQSD PNCFFIDDEN SRTLFLGYAV
260 270 280 290 300
AGQRLKAQFA QQGRVVDADH PLFVYLPCGV GGGPGGVAFG LKLAFGDNVH
310 320 330 340 350
CFFAEPTHSP CMLLGVYTGL HDAISVQEIG VDNLTAADGL AVGRASGFVG
360 370 380 390 400
RAMERLLDGL YTLDDRTMYD MLGWLAQEEG IRLEPSALAG MAGPQRVCRS
410 420 430 440
TDYQQMHAFS AEQLNHATHL VWATGGGMVP EEEMAQYLAK GR
Length:442
Mass (Da):47,767
Last modified:October 23, 2007 - v1
Checksum:iD90B217048AD9BF9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000822 Genomic DNA. Translation: ABV11200.1.
RefSeqiWP_012000781.1. NC_009792.1.

Genome annotation databases

EnsemblBacteriaiABV11200; ABV11200; CKO_00021.
KEGGicko:CKO_00021.
PATRICi20383534. VBICitKos71230_0019.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000822 Genomic DNA. Translation: ABV11200.1.
RefSeqiWP_012000781.1. NC_009792.1.

3D structure databases

ProteinModelPortaliA8ACI7.
SMRiA8ACI7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi290338.CKO_00021.

Proteomic databases

PRIDEiA8ACI7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABV11200; ABV11200; CKO_00021.
KEGGicko:CKO_00021.
PATRICi20383534. VBICitKos71230_0019.

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.
OrthoDBiPOG091H0G2T.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 3 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEiPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSDHD_CITK8
AccessioniPrimary (citable) accession number: A8ACI7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: October 23, 2007
Last modified: November 2, 2016
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.