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Protein

Transcription attenuation protein MtrB

Gene

mtrB

Organism
Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / FZB42) (Bacillus amyloliquefaciens subsp. plantarum)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Required for transcription attenuation control in the Trp operon. This trans-acting factor seems to recognize a 10 bases nucleotide sequence in the Trp leader transcript causing transcription termination. Binds the leader RNA only in presence of L-tryptophan.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciBAMY326423:GCM4-2091-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription attenuation protein MtrBUniRule annotation
Alternative name(s):
Trp RNA-binding attenuation proteinUniRule annotation
Short name:
TRAPUniRule annotation
Tryptophan RNA-binding attenuator proteinUniRule annotation
Gene namesi
Name:mtrBUniRule annotation
Ordered Locus Names:RBAM_020930
OrganismiBacillus velezensis (strain DSM 23117 / BGSC 10A6 / FZB42) (Bacillus amyloliquefaciens subsp. plantarum)
Taxonomic identifieri326423 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001120 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7575Transcription attenuation protein MtrBPRO_1000046970Add
BLAST

Interactioni

Subunit structurei

Oligomer of 11 identical subunits arranged in doughnut-like structure.UniRule annotation

Protein-protein interaction databases

STRINGi326423.RBAM_020930.

Structurei

3D structure databases

ProteinModelPortaliA7Z629.
SMRiA7Z629. Positions 8-75.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the MtrB family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105WP2. Bacteria.
ENOG411234W. LUCA.
HOGENOMiHOG000245485.
KOiK06285.
OMAiFHHTEKL.
OrthoDBiEOG64V2JJ.

Family and domain databases

Gene3Di2.60.40.50. 1 hit.
HAMAPiMF_00798. Trp_attenuator.
InterProiIPR000824. MtrB.
IPR016031. Trp_RNA-bd_attenuator-like_dom.
IPR023558. Trp_RNA-bd_attenuator_dom.
[Graphical view]
PfamiPF02081. TrpBP. 1 hit.
[Graphical view]
PRINTSiPR00687. TRPRNAAP.
SUPFAMiSSF51219. SSF51219. 1 hit.

Sequencei

Sequence statusi: Complete.

A7Z629-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNSKHSSDFV VIKAVEDGVN VIGLTRGTDT KFHHSEKLDK GEVIIAQFTE
60 70
HTSAIKVRGN ALIQTAYGEM NSEKK
Length:75
Mass (Da):8,258
Last modified:October 23, 2007 - v1
Checksum:iB059F9AA5EA04B38
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000560 Genomic DNA. Translation: ABS74455.1.
RefSeqiWP_003153449.1. NC_009725.1.

Genome annotation databases

EnsemblBacteriaiABS74455; ABS74455; RBAM_020930.
GeneIDi9779004.
KEGGibay:RBAM_020930.
PATRICi18749266. VBIBacAmy31356_2109.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000560 Genomic DNA. Translation: ABS74455.1.
RefSeqiWP_003153449.1. NC_009725.1.

3D structure databases

ProteinModelPortaliA7Z629.
SMRiA7Z629. Positions 8-75.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi326423.RBAM_020930.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABS74455; ABS74455; RBAM_020930.
GeneIDi9779004.
KEGGibay:RBAM_020930.
PATRICi18749266. VBIBacAmy31356_2109.

Phylogenomic databases

eggNOGiENOG4105WP2. Bacteria.
ENOG411234W. LUCA.
HOGENOMiHOG000245485.
KOiK06285.
OMAiFHHTEKL.
OrthoDBiEOG64V2JJ.

Enzyme and pathway databases

BioCyciBAMY326423:GCM4-2091-MONOMER.

Family and domain databases

Gene3Di2.60.40.50. 1 hit.
HAMAPiMF_00798. Trp_attenuator.
InterProiIPR000824. MtrB.
IPR016031. Trp_RNA-bd_attenuator-like_dom.
IPR023558. Trp_RNA-bd_attenuator_dom.
[Graphical view]
PfamiPF02081. TrpBP. 1 hit.
[Graphical view]
PRINTSiPR00687. TRPRNAAP.
SUPFAMiSSF51219. SSF51219. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 23117 / BGSC 10A6 / FZB42.

Entry informationi

Entry nameiMTRB_BACVZ
AccessioniPrimary (citable) accession number: A7Z629
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: October 23, 2007
Last modified: July 6, 2016
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.