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A7Z4M9

- SUCC_BACA2

UniProt

A7Z4M9 - SUCC_BACA2

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Protein
Succinyl-CoA ligase [ADP-forming] subunit beta
Gene
sucC, RBAM_015920
Organism
Bacillus amyloliquefaciens subsp. plantarum (strain DSM 23117 / BGSC 10A6 / FZB42)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + succinate + CoA = ADP + phosphate + succinyl-CoA.UniRule annotation

Cofactori

Binds 1 magnesium or manganese ion per subunit By similarity.

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi197 – 1971Magnesium or manganese By similarity
Metal bindingi199 – 1991Magnesium or manganese By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi35 – 10874ATP By similarity
Add
BLAST

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-HAMAP
  2. magnesium ion binding Source: UniProtKB-HAMAP
  3. manganese ion binding Source: UniProtKB-HAMAP
  4. succinate-CoA ligase (ADP-forming) activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. tricarboxylic acid cycle Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ligase

Keywords - Biological processi

Tricarboxylic acid cycle

Keywords - Ligandi

ATP-binding, Magnesium, Manganese, Metal-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciBAMY326423:GCM4-1590-MONOMER.
UniPathwayiUPA00223; UER00999.

Names & Taxonomyi

Protein namesi
Recommended name:
Succinyl-CoA ligase [ADP-forming] subunit beta (EC:6.2.1.5)
Alternative name(s):
Succinyl-CoA synthetase subunit beta
Short name:
SCS-beta
Gene namesi
Name:sucC
Ordered Locus Names:RBAM_015920
OrganismiBacillus amyloliquefaciens subsp. plantarum (strain DSM 23117 / BGSC 10A6 / FZB42)
Taxonomic identifieri326423 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001120: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 385385Succinyl-CoA ligase [ADP-forming] subunit betaUniRule annotation
PRO_1000082004Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei220 – 2201Phosphoserine By similarity

Keywords - PTMi

Phosphoprotein

Interactioni

Subunit structurei

Heterotetramer of two alpha and two beta subunits By similarity.

Protein-protein interaction databases

STRINGi326423.RBAM_015920.

Structurei

3D structure databases

ProteinModelPortaliA7Z4M9.
SMRiA7Z4M9. Positions 1-385.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini9 – 244236ATP-grasp
Add
BLAST

Sequence similaritiesi

Contains 1 ATP-grasp domain.

Phylogenomic databases

eggNOGiCOG0045.
HOGENOMiHOG000007059.
KOiK01903.
OMAiAAGRICK.
OrthoDBiEOG644ZT0.

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
3.40.50.261. 1 hit.
HAMAPiMF_00558. Succ_CoA_beta.
InterProiIPR011761. ATP-grasp.
IPR013650. ATP-grasp_succ-CoA_synth-type.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR005811. CoA_ligase.
IPR017866. Succ-CoA_synthase_bsu_CS.
IPR005809. Succ_CoA_synthase_bsu.
IPR016102. Succinyl-CoA_synth-like.
[Graphical view]
PANTHERiPTHR11815. PTHR11815. 1 hit.
PfamiPF08442. ATP-grasp_2. 1 hit.
PF00549. Ligase_CoA. 1 hit.
[Graphical view]
PIRSFiPIRSF001554. SucCS_beta. 1 hit.
SUPFAMiSSF52210. SSF52210. 1 hit.
TIGRFAMsiTIGR01016. sucCoAbeta. 1 hit.
PROSITEiPS50975. ATP_GRASP. 1 hit.
PS01217. SUCCINYL_COA_LIG_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A7Z4M9-1 [UniParc]FASTAAdd to Basket

« Hide

MNIHEYQGKE VLRKYGVSVP EGKVAFTAEE AVEKAESLSS SVYVVKAQIH    50
AGGRGKAGGV KIAKTKDEVK EYAEELLGKT LVTHQTGPDG QVIKRLLIEE 100
GCDIKKEYYV GLVLDRATSR IVLMASEEGG TEIEEVAEKT PEKIKKAVID 150
PAVGLQGYQA REIAFAINIP KELVGKAAKF MLGLYKAFVE KDCSIAEINP 200
LVVTGDGNVM ALDAKLNFDS NALYRQKDIM EYRDLDEEDP KEIEASKYDL 250
SYISLDGNIG CMVNGAGLAM STMDIIKHYG GEPANFLDVG GGATAEKVTE 300
AFKIILSDQN VKGIFVNIFG GIMKCDVIAE GVVEATRQVG LTLPLVVRLE 350
GTNVDLGKKI LNESGLNITS AESMADGAQK IVSLV 385
Length:385
Mass (Da):41,514
Last modified:October 23, 2007 - v1
Checksum:iA477F07640FF24E2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000560 Genomic DNA. Translation: ABS73955.1.
RefSeqiYP_001421186.1. NC_009725.1.

Genome annotation databases

EnsemblBacteriaiABS73955; ABS73955; RBAM_015920.
GeneIDi5463277.
KEGGibay:RBAM_015920.
PATRICi18748250. VBIBacAmy31356_1601.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000560 Genomic DNA. Translation: ABS73955.1 .
RefSeqi YP_001421186.1. NC_009725.1.

3D structure databases

ProteinModelPortali A7Z4M9.
SMRi A7Z4M9. Positions 1-385.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 326423.RBAM_015920.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABS73955 ; ABS73955 ; RBAM_015920 .
GeneIDi 5463277.
KEGGi bay:RBAM_015920.
PATRICi 18748250. VBIBacAmy31356_1601.

Phylogenomic databases

eggNOGi COG0045.
HOGENOMi HOG000007059.
KOi K01903.
OMAi AAGRICK.
OrthoDBi EOG644ZT0.

Enzyme and pathway databases

UniPathwayi UPA00223 ; UER00999 .
BioCyci BAMY326423:GCM4-1590-MONOMER.

Family and domain databases

Gene3Di 3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
3.40.50.261. 1 hit.
HAMAPi MF_00558. Succ_CoA_beta.
InterProi IPR011761. ATP-grasp.
IPR013650. ATP-grasp_succ-CoA_synth-type.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR005811. CoA_ligase.
IPR017866. Succ-CoA_synthase_bsu_CS.
IPR005809. Succ_CoA_synthase_bsu.
IPR016102. Succinyl-CoA_synth-like.
[Graphical view ]
PANTHERi PTHR11815. PTHR11815. 1 hit.
Pfami PF08442. ATP-grasp_2. 1 hit.
PF00549. Ligase_CoA. 1 hit.
[Graphical view ]
PIRSFi PIRSF001554. SucCS_beta. 1 hit.
SUPFAMi SSF52210. SSF52210. 1 hit.
TIGRFAMsi TIGR01016. sucCoAbeta. 1 hit.
PROSITEi PS50975. ATP_GRASP. 1 hit.
PS01217. SUCCINYL_COA_LIG_3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 23117 / BGSC 10A6 / FZB42.

Entry informationi

Entry nameiSUCC_BACA2
AccessioniPrimary (citable) accession number: A7Z4M9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: October 23, 2007
Last modified: May 14, 2014
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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