Reviewed,
UniProtKB/Swiss-Prot A7Z4L3 (RNC_BACA2)
Last modified
February 9, 2010.
Version 18.
History...
Clusters with 100%,
90%,
50% identity |
Documents (1) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Ribonuclease 3 EC=3.1.26.3 Alternative name(s): Ribonuclease III Short name=RNase III | ||||
| Gene names |
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| Organism | Bacillus amyloliquefaciens (strain FZB42) [Complete proteome] [HAMAP] | ||||
| Taxonomic identifier | 326423 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Firmicutes › Bacillales › Bacillaceae › Bacillus |
Protein attributes
| Sequence length | 249 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology. |
General annotation (Comments)
| Function | Digests double-stranded RNA. Involved in the processing of ribosomal RNA precursors and of some mRNAs By similarity. HAMAP MF_00104 |
| Catalytic activity | Endonucleolytic cleavage to 5'-phosphomonoester. HAMAP MF_00104 |
| Subcellular location | Cytoplasm By similarity HAMAP MF_00104. |
| Sequence similarities | Contains 1 DRBM (double-stranded RNA-binding) domain. Contains 1 RNase III domain. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm |
| Ligand | RNA-binding |
| Molecular function | Endonuclease Hydrolase Nuclease |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Biological process | mRNA processing Inferred from electronic annotation. Source: HAMAP rRNA catabolic processInferred from electronic annotation. Source: InterPro rRNA processingInferred from electronic annotation. Source: HAMAP |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | double-stranded RNA binding Inferred from electronic annotation. Source: InterPro ribonuclease III activityInferred from electronic annotation. Source: HAMAP |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 249 | 249 | Ribonuclease 3 HAMAP MF_00104 | PRO_1000075722 | |||||
Regions | |||||||||
| Domain | 20 – 149 | 130 | RNase III | ||||||
| Domain | 175 – 244 | 70 | DRBM | ||||||
Sequences
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References
| [1] | "Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42." Chen X.H., Koumoutsi A., Scholz R., Eisenreich A., Schneider K., Heinemeyer I., Morgenstern B., Voss B., Hess W.R., Reva O., Junge H., Voigt B., Jungblut P.R., Vater J., Suessmuth R., Liesegang H., Strittmatter A., Gottschalk G., Borriss R. Nat. Biotechnol. 25:1007-1014(2007) [PubMed: 17704766] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | CP000560 Genomic DNA. Translation: ABS73939.1. |
| RefSeq | YP_001421170.1. |
3D structure databases | |
| SMR | A7Z4L3. Positions 18-242. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | A7Z4L3. |
Genome annotation databases | |
| GeneID | 5461729. |
| GenomeReviews | Gene locus RBAM_015760 in contig CP000560_GR. |
| KEGG | bay:RBAM_015760. |
Organism-specific databases | |
| CMR | Search... |
Phylogenomic databases | |
| eggNOG | COG0571. |
| HOGENOM | HBG744556. |
| OMA | ALTHKSF. |
Family and domain databases | |
| HAMAP | MF_00104. RNase_III. [Tree] |
| InterPro | IPR001159. Ds-RNA_bd. IPR014720. dsRNA-bd-like. IPR000999. RNase_III. IPR011907. RNase_III_bac. [Graphical view] |
| Gene3D | G3DSA:3.30.160.20. dsRNA-bd-like. 1 hit. G3DSA:1.10.1520.10. RNase_III. 1 hit. |
| Pfam | PF00035. dsrm. 1 hit. PF00636. Ribonuclease_3. 1 hit. [Graphical view] |
| SMART | SM00358. DSRM. 1 hit. SM00535. RIBOc. 1 hit. [Graphical view] |
| TIGRFAMs | TIGR02191. RNaseIII. 1 hit. |
| PROSITE | PS50137. DS_RBD. 1 hit. PS00517. RNASE_3_1. 1 hit. PS50142. RNASE_3_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | RNC_BACA2 | ||||||||
| Accession | Primary (citable) accession number: A7Z4L3 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes) | ||||||||

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