A7Z3V5 (A7Z3V5_BACA2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
YkoU EMBL ABS73681.1

Gene names

Name:	ykoU EMBL ABS73681.1
Ordered Locus Names:	RBAM_013180

Organism

Bacillus amyloliquefaciens (strain FZB42) [Complete proteome] [HAMAP] EMBL ABS73681.1

Taxonomic identifier

326423 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus subtilis group › Bacillus amyloliquefaciens › Bacillus amyloliquefaciens subsp. plantarum

Protein attributes

Sequence length	611 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A7Z3V5 [UniParc]. Last modified October 23, 2007. Version 1. Checksum: F9545C4DD5CBBC97	FASTA	611	69,802
	10 20 30 40 50 60 MVLTMQPILT SVPPEGSEWR YEVKYDGFRC LLRIDESGVT LTSRNGQTLT NQFPEITAFA 70 80 90 100 110 120 ARCFQHMKDR FPITLDGELV YLINPYRADF EHLQIRGRLK RTEAIESTAD RRPCRFLAFD 130 140 150 160 170 180 LLVLEGAGTV SLPYVKRKRA LSKLLKEANL PACPHHLAEE AIQYIPEHTD FDALWDKVVR 190 200 210 220 230 240 HDGEGIVAKR ASSGWAENKR SPDWQKYKHM KTAHVLLTGF NPKNGYVTAS VLKDGTAVPI 250 260 270 280 290 300 ASVSHGMQAE EKNAVRTIME THGKKQNSGE YTLEPSICMT VQYLTILQDT LREVSFVSFQ 310 320 330 340 350 360 FEMDWTECTY QQLILHSKTL PPKLQFTSLD KIVFKKREKT KADFLSYMVK MSDFLMPFLK 370 380 390 400 410 420 DRAVTVIRYP HGAPGESFFQ KNKPDYTPDF VSSVFDGSHE HIVCSSIPSL LWLANQLALE 430 440 450 460 470 480 FHVPFQTVHS ERPAEIVIDL DPPSRNDFPM AVEAAHVLKQ LFDSFSITSF PKLSGNKGIQ 490 500 510 520 530 540 LYIPLSPEAF TYEETRAFTM LIADYCVRTR PDLFTTERFI KNRNGRLYLD YLQHAEGKTI 550 560 570 580 590 600 IAPYSTRGNE LGTVAAPLYW SEVNSSLTPD DYTIDTVVNR VRTEGDPFYD FYRNPQDGPL 610 SIVLEQIKRK S

References

[1]

"Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42." Chen X.H., Koumoutsi A., Scholz R., Eisenreich A., Schneider K., Heinemeyer I., Morgenstern B., Voss B., Hess W.R., Reva O., Junge H., Voigt B., Jungblut P.R., Vater J., Suessmuth R., Liesegang H., Strittmatter A., Gottschalk G., Borriss R. Nat. Biotechnol. 25:1007-1014(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: FZB42.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000560 Genomic DNA. Translation: ABS73681.1.
RefSeq	YP_001420912.1. NC_009725.1.
3D structure databases
ProteinModelPortal	A7Z3V5.
ModBase	Search...
Protein-protein interaction databases
STRING	326423.RBAM_013180.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABS73681; ABS73681; RBAM_013180.
GeneID	5459648.
KEGG	bay:RBAM_013180.
PATRIC	18747667. VBIBacAmy31356_1310.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000008893.
KO	K01971.
OMA	VSMPITW.
ProtClustDB	PRK09633.
Family and domain databases
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR014146. DNA_pol_LigD_ligase_dom. IPR014145. LigD_pol. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
TIGRFAMs	TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A7Z3V5_BACA2

Accession

Primary (citable) accession number: A7Z3V5

Entry history

Integrated into UniProtKB/TrEMBL:	October 23, 2007
Last sequence update:	October 23, 2007
Last modified:	May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)