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Protein
Submitted name:

YkoU

Gene

ykoU

Organism
Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / FZB42) (Bacillus amyloliquefaciens subsp. plantarum)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

BioCyciBAMY326423:G1G84-1343-MONOMER

Names & Taxonomyi

Protein namesi
Submitted name:
YkoUImported
Gene namesi
Name:ykoUImported
Ordered Locus Names:RBAM_013180Imported
OrganismiBacillus velezensis (strain DSM 23117 / BGSC 10A6 / FZB42) (Bacillus amyloliquefaciens subsp. plantarum)Imported
Taxonomic identifieri326423 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillusBacillus amyloliquefaciens group
Proteomesi
  • UP000001120 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliA7Z3V5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini116 – 208DNA_LIGASE_A3InterPro annotationAdd BLAST93

Phylogenomic databases

eggNOGiENOG4105DQE Bacteria
COG1793 LUCA
COG3285 LUCA
HOGENOMiHOG000008893
KOiK01971
OMAiAMMVEDH

Family and domain databases

CDDicd04866 LigD_Pol_like_3, 1 hit
InterProiView protein in InterPro
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR014146 LigD_ligase_dom
IPR033652 LigD_Pol-like_3
IPR014145 LigD_pol_dom
IPR014143 NHEJ_ligase_prk
PfamiView protein in Pfam
PF01068 DNA_ligase_A_M, 1 hit
TIGRFAMsiTIGR02778 ligD_pol, 1 hit
TIGR02779 NHEJ_ligase_lig, 1 hit
TIGR02776 NHEJ_ligase_prk, 1 hit
PROSITEiView protein in PROSITE
PS00697 DNA_LIGASE_A1, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

A7Z3V5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLTMQPILT SVPPEGSEWR YEVKYDGFRC LLRIDESGVT LTSRNGQTLT
60 70 80 90 100
NQFPEITAFA ARCFQHMKDR FPITLDGELV YLINPYRADF EHLQIRGRLK
110 120 130 140 150
RTEAIESTAD RRPCRFLAFD LLVLEGAGTV SLPYVKRKRA LSKLLKEANL
160 170 180 190 200
PACPHHLAEE AIQYIPEHTD FDALWDKVVR HDGEGIVAKR ASSGWAENKR
210 220 230 240 250
SPDWQKYKHM KTAHVLLTGF NPKNGYVTAS VLKDGTAVPI ASVSHGMQAE
260 270 280 290 300
EKNAVRTIME THGKKQNSGE YTLEPSICMT VQYLTILQDT LREVSFVSFQ
310 320 330 340 350
FEMDWTECTY QQLILHSKTL PPKLQFTSLD KIVFKKREKT KADFLSYMVK
360 370 380 390 400
MSDFLMPFLK DRAVTVIRYP HGAPGESFFQ KNKPDYTPDF VSSVFDGSHE
410 420 430 440 450
HIVCSSIPSL LWLANQLALE FHVPFQTVHS ERPAEIVIDL DPPSRNDFPM
460 470 480 490 500
AVEAAHVLKQ LFDSFSITSF PKLSGNKGIQ LYIPLSPEAF TYEETRAFTM
510 520 530 540 550
LIADYCVRTR PDLFTTERFI KNRNGRLYLD YLQHAEGKTI IAPYSTRGNE
560 570 580 590 600
LGTVAAPLYW SEVNSSLTPD DYTIDTVVNR VRTEGDPFYD FYRNPQDGPL
610
SIVLEQIKRK S
Length:611
Mass (Da):69,802
Last modified:October 23, 2007 - v1
Checksum:iF9545C4DD5CBBC97
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000560 Genomic DNA Translation: ABS73681.1
RefSeqiWP_012117401.1, NC_009725.1

Genome annotation databases

EnsemblBacteriaiABS73681; ABS73681; RBAM_013180
KEGGibay:RBAM_013180

Similar proteinsi

Entry informationi

Entry nameiA7Z3V5_BACVZ
AccessioniPrimary (citable) accession number: A7Z3V5
Entry historyiIntegrated into UniProtKB/TrEMBL: October 23, 2007
Last sequence update: October 23, 2007
Last modified: May 23, 2018
This is version 67 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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