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A7Z3V5

- A7Z3V5_BACA2

UniProt

A7Z3V5 - A7Z3V5_BACA2

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Protein
Submitted name:

YkoU

Gene

ykoU

Organism
Bacillus amyloliquefaciens subsp. plantarum (strain DSM 23117 / BGSC 10A6 / FZB42)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciBAMY326423:GCM4-1316-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
YkoUImported
Gene namesi
Name:ykoUImported
Ordered Locus Names:RBAM_013180Imported
OrganismiBacillus amyloliquefaciens subsp. plantarum (strain DSM 23117 / BGSC 10A6 / FZB42)Imported
Taxonomic identifieri326423 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001120: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi326423.RBAM_013180.

Structurei

3D structure databases

ProteinModelPortaliA7Z3V5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000008893.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A7Z3V5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVLTMQPILT SVPPEGSEWR YEVKYDGFRC LLRIDESGVT LTSRNGQTLT
60 70 80 90 100
NQFPEITAFA ARCFQHMKDR FPITLDGELV YLINPYRADF EHLQIRGRLK
110 120 130 140 150
RTEAIESTAD RRPCRFLAFD LLVLEGAGTV SLPYVKRKRA LSKLLKEANL
160 170 180 190 200
PACPHHLAEE AIQYIPEHTD FDALWDKVVR HDGEGIVAKR ASSGWAENKR
210 220 230 240 250
SPDWQKYKHM KTAHVLLTGF NPKNGYVTAS VLKDGTAVPI ASVSHGMQAE
260 270 280 290 300
EKNAVRTIME THGKKQNSGE YTLEPSICMT VQYLTILQDT LREVSFVSFQ
310 320 330 340 350
FEMDWTECTY QQLILHSKTL PPKLQFTSLD KIVFKKREKT KADFLSYMVK
360 370 380 390 400
MSDFLMPFLK DRAVTVIRYP HGAPGESFFQ KNKPDYTPDF VSSVFDGSHE
410 420 430 440 450
HIVCSSIPSL LWLANQLALE FHVPFQTVHS ERPAEIVIDL DPPSRNDFPM
460 470 480 490 500
AVEAAHVLKQ LFDSFSITSF PKLSGNKGIQ LYIPLSPEAF TYEETRAFTM
510 520 530 540 550
LIADYCVRTR PDLFTTERFI KNRNGRLYLD YLQHAEGKTI IAPYSTRGNE
560 570 580 590 600
LGTVAAPLYW SEVNSSLTPD DYTIDTVVNR VRTEGDPFYD FYRNPQDGPL
610
SIVLEQIKRK S
Length:611
Mass (Da):69,802
Last modified:October 23, 2007 - v1
Checksum:iF9545C4DD5CBBC97
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000560 Genomic DNA. Translation: ABS73681.1.
RefSeqiYP_001420912.1. NC_009725.1.

Genome annotation databases

EnsemblBacteriaiABS73681; ABS73681; RBAM_013180.
GeneIDi5459648.
KEGGibay:RBAM_013180.
PATRICi18747667. VBIBacAmy31356_1310.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000560 Genomic DNA. Translation: ABS73681.1 .
RefSeqi YP_001420912.1. NC_009725.1.

3D structure databases

ProteinModelPortali A7Z3V5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 326423.RBAM_013180.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABS73681 ; ABS73681 ; RBAM_013180 .
GeneIDi 5459648.
KEGGi bay:RBAM_013180.
PATRICi 18747667. VBIBacAmy31356_1310.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000008893.
KOi K01971.
OMAi DWTIRSI.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci BAMY326423:GCM4-1316-MONOMER.

Family and domain databases

InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014145. LigD_pol.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 23117 / BGSC 10A6 / FZB42Imported.

Entry informationi

Entry nameiA7Z3V5_BACA2
AccessioniPrimary (citable) accession number: A7Z3V5
Entry historyi
Integrated into UniProtKB/TrEMBL: October 23, 2007
Last sequence update: October 23, 2007
Last modified: October 1, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3