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A7Z3V5

- A7Z3V5_BACA2

UniProt

A7Z3V5 - A7Z3V5_BACA2

Protein
Submitted name:

YkoU

Gene

ykoU

Organism
Bacillus amyloliquefaciens subsp. plantarum (strain DSM 23117 / BGSC 10A6 / FZB42)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 42 (01 Oct 2014)
      Sequence version 1 (23 Oct 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Enzyme and pathway databases

    BioCyciBAMY326423:GCM4-1316-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    YkoUImported
    Gene namesi
    Name:ykoUImported
    Ordered Locus Names:RBAM_013180Imported
    OrganismiBacillus amyloliquefaciens subsp. plantarum (strain DSM 23117 / BGSC 10A6 / FZB42)Imported
    Taxonomic identifieri326423 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000001120: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi326423.RBAM_013180.

    Structurei

    3D structure databases

    ProteinModelPortaliA7Z3V5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000008893.
    KOiK01971.
    OMAiDWTIRSI.
    OrthoDBiEOG661H49.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A7Z3V5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVLTMQPILT SVPPEGSEWR YEVKYDGFRC LLRIDESGVT LTSRNGQTLT    50
    NQFPEITAFA ARCFQHMKDR FPITLDGELV YLINPYRADF EHLQIRGRLK 100
    RTEAIESTAD RRPCRFLAFD LLVLEGAGTV SLPYVKRKRA LSKLLKEANL 150
    PACPHHLAEE AIQYIPEHTD FDALWDKVVR HDGEGIVAKR ASSGWAENKR 200
    SPDWQKYKHM KTAHVLLTGF NPKNGYVTAS VLKDGTAVPI ASVSHGMQAE 250
    EKNAVRTIME THGKKQNSGE YTLEPSICMT VQYLTILQDT LREVSFVSFQ 300
    FEMDWTECTY QQLILHSKTL PPKLQFTSLD KIVFKKREKT KADFLSYMVK 350
    MSDFLMPFLK DRAVTVIRYP HGAPGESFFQ KNKPDYTPDF VSSVFDGSHE 400
    HIVCSSIPSL LWLANQLALE FHVPFQTVHS ERPAEIVIDL DPPSRNDFPM 450
    AVEAAHVLKQ LFDSFSITSF PKLSGNKGIQ LYIPLSPEAF TYEETRAFTM 500
    LIADYCVRTR PDLFTTERFI KNRNGRLYLD YLQHAEGKTI IAPYSTRGNE 550
    LGTVAAPLYW SEVNSSLTPD DYTIDTVVNR VRTEGDPFYD FYRNPQDGPL 600
    SIVLEQIKRK S 611
    Length:611
    Mass (Da):69,802
    Last modified:October 23, 2007 - v1
    Checksum:iF9545C4DD5CBBC97
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000560 Genomic DNA. Translation: ABS73681.1.
    RefSeqiYP_001420912.1. NC_009725.1.

    Genome annotation databases

    EnsemblBacteriaiABS73681; ABS73681; RBAM_013180.
    GeneIDi5459648.
    KEGGibay:RBAM_013180.
    PATRICi18747667. VBIBacAmy31356_1310.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000560 Genomic DNA. Translation: ABS73681.1 .
    RefSeqi YP_001420912.1. NC_009725.1.

    3D structure databases

    ProteinModelPortali A7Z3V5.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 326423.RBAM_013180.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABS73681 ; ABS73681 ; RBAM_013180 .
    GeneIDi 5459648.
    KEGGi bay:RBAM_013180.
    PATRICi 18747667. VBIBacAmy31356_1310.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000008893.
    KOi K01971.
    OMAi DWTIRSI.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci BAMY326423:GCM4-1316-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR014145. LigD_pol.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 23117 / BGSC 10A6 / FZB42Imported.

    Entry informationi

    Entry nameiA7Z3V5_BACA2
    AccessioniPrimary (citable) accession number: A7Z3V5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 23, 2007
    Last sequence update: October 23, 2007
    Last modified: October 1, 2014
    This is version 42 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3