Reviewed, UniProtKB/Swiss-Prot A7Y3E0 (NDHJ_IPOPU)

Names and origin

Protein names

Recommended name:
    NAD(P)H-quinone oxidoreductase subunit J, chloroplastic
    EC=1.6.5.-
Alternative name(s):
    NAD(P)H dehydrogenase subunit J
    NADH-plastoquinone oxidoreductase subunit J

Gene names

Name:

ndhJ

Encoded on

Plastid; Chloroplast

Organism

Ipomoea purpurea (Common morning glory) (Pharbitis purpurea)

Taxonomic identifier

4121 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › asterids › lamiids › Solanales › Convolvulaceae › Ipomoeeae › Ipomoea

Protein attributes

Sequence length	165 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient By similarity.
Catalytic activity	NAD(P)H + plastoquinone = NAD(P)+ + plastoquinol. HAMAP MF_01357
Subunit structure	NDH is composed of at least 16 different subunits, 5 of which are encoded in the nucleus By similarity.
Subcellular location	Plastid › chloroplast thylakoid membrane; Peripheral membrane protein; Stromal side By similarity.
Sequence similarities	Belongs to the complex I 30 kDa subunit family.

Ontologies

Keywords
Biological process	Transport
Cellular component	Chloroplast Membrane Plastid Thylakoid
Ligand	NAD NADP Plastoquinone
Molecular function	Oxidoreductase
PTM	Quinone
Gene Ontology (GO)
Biological process	oxidation reduction Inferred from electronic annotation. Source: HAMAP photosynthesis, light reaction Inferred from electronic annotation. Source: HAMAP transport Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	chloroplast thylakoid membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	NADH dehydrogenase (ubiquinone) activity Inferred from electronic annotation. Source: InterPro quinone binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 165	165	NAD(P)H-quinone oxidoreductase subunit J, chloroplastic HAMAP MF_01357		PRO_0000358273

Sequences

	Sequence		Length	Mass (Da)
	A7Y3E0-1 [UniParc]. Last modified October 23, 2007. Version 1. Checksum: D10183A88C3EA18F	FASTA	165	19,440
	10 20 30 40 50 60 MQSFLSVWLV KHGIIHRSLG FDYQGIETLQ IKPEDWHSVA VILYVYGYNY LRSQCAYDVA 70 80 90 100 110 120 PGGLLASVYH LTRIEYGVTR IEYGAYQPEE VCIKVFASRK NSRIPSVFWI WKSADFQERE 130 140 150 160 SYDMLGISYD NHPRLKRILM PESWIGWPLR KDYVAPHFYE IQDAH

References

[1]

"Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta." McNeal J.R., Kuehl J.V., Boore J.L., dePamphilis C.W. BMC Plant Biol. 7:57-57(2007) [PubMed: 17956636] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	EU118126 Genomic DNA. Translation: ABV02351.1.
RefSeq	YP_001468311.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	5601309.
Family and domain databases
HAMAP	MF_01357. [Tree]
InterPro	IPR001268. NADH_UbQ_OxRdtase_30kDa_su. [Graphical view]
Pfam	PF00329. Complex1_30kDa. 1 hit. [Graphical view]
ProDom	PD001581. Complex1_30K. 1 hit. [Graphical view] [Entries sharing at least one domain]
PROSITE	PS00542. COMPLEX1_30K. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

NDHJ_IPOPU

Accession

Primary (citable) accession number: A7Y3E0

Entry history

Integrated into UniProtKB/Swiss-Prot:	December 16, 2008
Last sequence update:	October 23, 2007
Last modified:	June 16, 2009
This is version 10 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)