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A7X3F0

- RS4_STAA1

UniProt

A7X3F0 - RS4_STAA1

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Protein

30S ribosomal protein S4

Gene

rpsD

Organism
Staphylococcus aureus (strain Mu3 / ATCC 700698)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.UniRule annotation
With S5 and S12 plays an important role in translational accuracy.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciSAUR418127:GJP9-1721-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S4UniRule annotation
Gene namesi
Name:rpsDUniRule annotation
Ordered Locus Names:SAHV_1705
OrganismiStaphylococcus aureus (strain Mu3 / ATCC 700698)
Taxonomic identifieri418127 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcus
ProteomesiUP000001130: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. small ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 20020030S ribosomal protein S4PRO_0000322337Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.UniRule annotation

Protein-protein interaction databases

STRINGi418127.SAHV_1705.

Structurei

3D structure databases

ProteinModelPortaliA7X3F0.
SMRiA7X3F0. Positions 43-200.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini92 – 15564S4 RNA-bindingUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ribosomal protein S4P family.UniRule annotation
Contains 1 S4 RNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG0522.
HOGENOMiHOG000221004.
KOiK02986.
OMAiTCKLSRR.
OrthoDBiEOG6N3CXM.

Family and domain databases

Gene3Di1.10.1050.10. 1 hit.
3.10.290.10. 1 hit.
HAMAPiMF_01306_B. Ribosomal_S4_B.
InterProiIPR022801. Ribosomal_S4/S9.
IPR001912. Ribosomal_S4/S9_N.
IPR005709. Ribosomal_S4_bac-type.
IPR018079. Ribosomal_S4_CS.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11831. PTHR11831. 1 hit.
PfamiPF00163. Ribosomal_S4. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTiSM00363. S4. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01017. rpsD_bact. 1 hit.
PROSITEiPS00632. RIBOSOMAL_S4. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A7X3F0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARFRGSNWK KSRRLGISLS GTGKELEKRP YAPGQHGPNQ RKKLSEYGLQ
60 70 80 90 100
LREKQKLRYL YGMTERQFRN TFDIAGKKFG VHGENFMILL ASRLDAVVYS
110 120 130 140 150
LGLARTRRQA RQLVNHGHIL VDGKRVDIPS YSVKPGQTIS VREKSQKLNI
160 170 180 190 200
IVESVEINNF VPEYLNFDAD SLTGTFVRLP ERSELPAEIN EQLIVEYYSR
Length:200
Mass (Da):23,013
Last modified:October 23, 2007 - v1
Checksum:iE4BBB131EF37A6ED
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009324 Genomic DNA. Translation: BAF78588.1.
RefSeqiYP_001442295.1. NC_009782.1.

Genome annotation databases

EnsemblBacteriaiBAF78588; BAF78588; SAHV_1705.
GeneIDi5559030.
KEGGisaw:SAHV_1705.
PATRICi19558466. VBIStaAur127830_1751.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP009324 Genomic DNA. Translation: BAF78588.1 .
RefSeqi YP_001442295.1. NC_009782.1.

3D structure databases

ProteinModelPortali A7X3F0.
SMRi A7X3F0. Positions 43-200.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 418127.SAHV_1705.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAF78588 ; BAF78588 ; SAHV_1705 .
GeneIDi 5559030.
KEGGi saw:SAHV_1705.
PATRICi 19558466. VBIStaAur127830_1751.

Phylogenomic databases

eggNOGi COG0522.
HOGENOMi HOG000221004.
KOi K02986.
OMAi TCKLSRR.
OrthoDBi EOG6N3CXM.

Enzyme and pathway databases

BioCyci SAUR418127:GJP9-1721-MONOMER.

Family and domain databases

Gene3Di 1.10.1050.10. 1 hit.
3.10.290.10. 1 hit.
HAMAPi MF_01306_B. Ribosomal_S4_B.
InterProi IPR022801. Ribosomal_S4/S9.
IPR001912. Ribosomal_S4/S9_N.
IPR005709. Ribosomal_S4_bac-type.
IPR018079. Ribosomal_S4_CS.
IPR002942. S4_RNA-bd.
[Graphical view ]
PANTHERi PTHR11831. PTHR11831. 1 hit.
Pfami PF00163. Ribosomal_S4. 1 hit.
PF01479. S4. 1 hit.
[Graphical view ]
SMARTi SM00363. S4. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR01017. rpsD_bact. 1 hit.
PROSITEi PS00632. RIBOSOMAL_S4. 1 hit.
PS50889. S4. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Mutated response regulator graR is responsible for phenotypic conversion of Staphylococcus aureus from heterogeneous vancomycin-intermediate resistance to vancomycin-intermediate resistance."
    Neoh H.-M., Cui L., Yuzawa H., Takeuchi F., Matsuo M., Hiramatsu K.
    Antimicrob. Agents Chemother. 52:45-53(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Mu3 / ATCC 700698.

Entry informationi

Entry nameiRS4_STAA1
AccessioniPrimary (citable) accession number: A7X3F0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: October 23, 2007
Last modified: October 1, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3