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A7SFV7 (A7SFV7_NEMVE) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Predicted protein EMBL EDO37396.1
Gene names
ORF Names:v1g211643
OrganismNematostella vectensis (Starlet sea anemone) [Reference proteome]
Taxonomic identifier45351 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Cnidaria › Anthozoa › Hexacorallia › Actiniaria › Edwardsiidae › Nematostella

Protein attributes

Sequence length428 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ligand-gated ion channel (TC 1.A.9) family. [View classification] RuleBase RU000687

Sequences

Sequence LengthMass (Da)Tools
A7SFV7 [UniParc].

Last modified October 2, 2007. Version 1.
Checksum: AC4307A7571A8180

FASTA42849,569
        10         20         30         40         50         60 
MRGREGLGLC WLILATQLWL SSAKQRGVDE ERMTQILDTL LDKVNYDNRV RPFYNGKPVV 

        70         80         90        100        110        120 
VKVGYWILSV DSIDVVNMDF TVDLFLRQEW VDPRLDHGLN ETIYLGHRVM QKIWTPDSYF 

       130        140        150        160        170        180 
LNAKTAKMHH VTTPNQMTLI APMGVVKYNT RVTVKAACTI DLRSFPMDQQ NCPLVLESYG 

       190        200        210        220        230        240 
YDRSHIVYHW EGNATDGLPF VPNRMRIMPQ YSLVRLTLSR EWHQYIIGNF SAVVAVFSIE 

       250        260        270        280        290        300 
RSYTYFLTHV YGTSCVIVFI SWMGFVIPPD QTAARIAVGV TTLLTQVTVI NILNSSMPKV 

       310        320        330        340        350        360 
SYVKSIDKFL ISCLIFVFLS LIEYCVILIL DGKRTRRHQQ HTDTANTHET IEPTKEADQP 

       370        380        390        400        410        420 
WPNNEACQIG KQEERKFLHC TDKLLLRKRF REWTFSDSFL AGIDQTALLV FPLTFVLFHI 


LYWMGFLE

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References

[1]"Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization."
Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., Salamov A., Terry A., Shapiro H., Lindquist E., Kapitonov V.V., Jurka J., Genikhovich G., Grigoriev I.V., Lucas S.M., Steele R.E., Finnerty J.R., Technau U., Martindale M.Q., Rokhsar D.S.
Science 317:86-94(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CH2 X CH6.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		DS469647 Genomic DNA. Translation: EDO37396.1.
RefSeqXP_001629459.1. XM_001629409.1.

3D structure databases

ProteinModelPortalA7SFV7.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaNEMVEDRAFT_v1g211643-RA; NEMVEDRAFT_v1g211643-PA; NEMVEDRAFT_v1g211643.
GeneID5508933.
KEGGnve:NEMVE_v1g211643.

Phylogenomic databases

eggNOGKOG3643.
HOGENOMHOG000231335.

Family and domain databases

Gene3D2.70.170.10. 1 hit.
InterProIPR006028. GABAA_rcpt.
IPR006202. Neur_chan_lig-bd.
IPR006201. Neur_channel.
IPR006029. Neurotrans-gated_channel_TM.
IPR018000. Neurotransmitter_ion_chnl_CS.
[Graphical view]
PANTHERPTHR18945. PTHR18945. 1 hit.
PfamPF02931. Neur_chan_LBD. 1 hit.
PF02932. Neur_chan_memb. 1 hit.
[Graphical view]
PRINTSPR00253. GABAARECEPTR.
PR00252. NRIONCHANNEL.
SUPFAMSSF90112. Neu_channel_TM. 1 hit.
SSF63712. Neur_chan_LBD. 1 hit.
TIGRFAMsTIGR00860. LIC. 1 hit.
PROSITEPS00236. NEUROTR_ION_CHANNEL. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA7SFV7_NEMVE
AccessionPrimary (citable) accession number: A7SFV7
Entry history
Integrated into UniProtKB/TrEMBL: October 2, 2007
Last sequence update: October 2, 2007
Last modified: March 6, 2013
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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