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A7SE93 (A7SE93_NEMVE) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
ORF Names:v1g230001 EMBL EDO37995.1
OrganismNematostella vectensis (Starlet sea anemone) [Reference proteome]
Taxonomic identifier45351 [NCBI]
Taxonomic lineageEukaryotaMetazoaCnidariaAnthozoaHexacoralliaActiniariaEdwardsiidaeNematostella

Protein attributes

Sequence length894 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
A7SE93 [UniParc].

Last modified October 2, 2007. Version 1.
Checksum: A25E5D5D3781C802

FASTA894100,451
        10         20         30         40         50         60 
MAEDLKSFLV EYAPQGRAKC KGCKEQIEKS SARIAKLAPN PFSEDGGLMK QWYHVKCIFD 

        70         80         90        100        110        120 
SFSRARATTK KIEDAEDLDG FVDMKQDDQN TIKQLISGLS GKKVSPGKKA SQKPTSSPGQ 

       130        140        150        160        170        180 
KKVQGTLTFS PTNTSVRPLM TVAGSSKGTV SLLRIKRIAT YLVSQAGRIQ IVTCSNHTAQ 

       190        200        210        220        230        240 
IFRRAVAVLR ASDNLSASKA GAESSKDDAF REFRKLCVQL AEEPSYNAKT RLVANLLKKG 

       250        260        270        280        290        300 
PSGSGFQGDT TLWVKMLLPA INKRVYNLQS KQLVKLFSQI FCCNYDDMVT HLEEGGDVSE 

       310        320        330        340        350        360 
TISNFFTNSI ICKPAKKSNL TLQQVDSFLD RLKLLTKEDD QQRELCSITQ RCTSNDLKYI 

       370        380        390        400        410        420 
IRLIKHDLRM NAGAKHVLEA IDPDAYKAFQ ASNDLEDVVK RCLEKHASSG NDRVPGMSKK 

       430        440        450        460        470        480 
LSIRASLMTP VKPMLAEACK TFSYAIKKCP KGMLAEIKYD GERVQVHKSG SKFEFFSRSL 

       490        500        510        520        530        540 
KPVLPHKVSA FRDFLPKACP HGNNLILDCE VLLVDNKTSL PLPFGTLGIH KKSAFKDANV 

       550        560        570        580        590        600 
CLFIFDCLQF NEENVMRKSM TERRKILEEN VTVIPNRIML SETTFVKDEK KLSQLMARAM 

       610        620        630        640        650        660 
RDGLEGLVLK DVTGQYEPGK RHWLKMKKDY LEEGSMADTA DLVVLGAYYG TGNKGGLMSV 

       670        680        690        700        710        720 
FLMGVFNPRI KKWCTVAKCG NGHDDKTLDK LNRELKVKKI SKDPNRVPVW LEVHRSLIPD 

       730        740        750        760        770        780 
FVVDDPKKAP VWEITGAEFS KSTTHTADGI SIRFPRVTRI RDDKDWETAT DLDLLKPVVH 

       790        800        810        820        830        840 
LHAPLWPDNH RMRMYNTKNE DEPMDSDETV DNDDVTERKS SAKRKANQIE NDKDEASDRK 

       850        860        870        880        890 
ELPNVFSGLQ VYVPDTIKDF NKLRRYIIAS RYDGDVVTDK STATHIIANS KVTP 

« Hide

References

[1]"Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization."
Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., Salamov A., Terry A., Shapiro H., Lindquist E., Kapitonov V.V., Jurka J., Genikhovich G., Grigoriev I.V., Lucas S.M., Steele R.E., Finnerty J.R., Technau U., Martindale M.Q., Rokhsar D.S.
Science 317:86-94(2007) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: CH2 X CH6.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
DS469635 Genomic DNA. Translation: EDO37995.1.
RefSeqXP_001630058.1. XM_001630008.1.

3D structure databases

ProteinModelPortalA7SE93.
SMRA7SE93. Positions 1-110.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING45351.JGI230001.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaEDO37995; EDO37995; NEMVEDRAFT_v1g230001.
GeneID5509532.
KEGGnve:NEMVE_v1g230001.

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000007653.
KOK10776.
OMALFSEMKH.
OrthoDBEOG7BKCT2.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.30.1740.10. 1 hit.
3.40.50.10190. 1 hit.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
IPR001510. Znf_PARP.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
PF00645. zf-PARP. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
PS00347. PARP_ZN_FINGER_1. 1 hit.
PS50064. PARP_ZN_FINGER_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA7SE93_NEMVE
AccessionPrimary (citable) accession number: A7SE93
Entry history
Integrated into UniProtKB/TrEMBL: October 2, 2007
Last sequence update: October 2, 2007
Last modified: June 11, 2014
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)