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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Rcas_3449

Organism
Roseiflexus castenholzii (strain DSM 13941 / HLO8)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciRCAS383372:GH89-3492-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Rcas_3449Imported
OrganismiRoseiflexus castenholzii (strain DSM 13941 / HLO8)Imported
Taxonomic identifieri383372 [NCBI]
Taxonomic lineageiBacteriaChloroflexiChloroflexiaChloroflexalesRoseiflexineaeRoseiflexaceaeRoseiflexus
ProteomesiUP000000263 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi383372.Rcas_3449.

Structurei

3D structure databases

ProteinModelPortaliA7NPK3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A7NPK3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRHFAQLYTD LDETTRTGAK VEALMRYFER AEPADAAWAI FFLIGRRVRQ
60 70 80 90 100
AVPLPTLRAW AVEAAGIPDW LLGECYDAVG DFAETVALLL PEPGEWSVDV
110 120 130 140 150
DRSVLSFEGP QPLHRWVEDV LIPLRDREEA VQRAIVRAVW ATLGGTERFV
160 170 180 190 200
WNKLITGAFR VGVSQQLVVR ALARASGTDP AAIAHRLMGE WQPSAAFYRA
210 220 230 240 250
LLARETADAD VSRPYPFCLA HPLDDPPETL GSIDEWQAEW KWDGIRIRLI
260 270 280 290 300
RRAGQTFLWS RGEELMTDRF PEIAASGALL PDGIVIDGEV LPWKHGTVLP
310 320 330 340 350
FAQLQRRIGR KNLTRAVLDE APATLLAYDL IELNGVDVRH QPLEWRRTEL
360 370 380 390 400
ERLIATCAPD SQALLLSPVI VAADWDDLAA QWATSRARNV EGLMLKRRNS
410 420 430 440 450
PYRVGRVRGD WWKWKVAPYT IDAVLIYAQR GSGKRASLYT DYTFAVWDGD
460 470 480 490 500
RLTPFAKAYS GLTDDEIREV DAFVRRNTVE KFGPVRTVTP ALVFELAFEG
510 520 530 540
VQRSNRHKSG IAVRFPRILR WRRDKRPADA DTLERVRALL PEES
Length:544
Mass (Da):61,647
Last modified:October 2, 2007 - v1
Checksum:iF3FB900CD4574F92
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000804 Genomic DNA. Translation: ABU59499.1.
RefSeqiWP_012121923.1. NC_009767.1.

Genome annotation databases

EnsemblBacteriaiABU59499; ABU59499; Rcas_3449.
KEGGirca:Rcas_3449.
PATRICi23345618. VBIRosCas91182_3856.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000804 Genomic DNA. Translation: ABU59499.1.
RefSeqiWP_012121923.1. NC_009767.1.

3D structure databases

ProteinModelPortaliA7NPK3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi383372.Rcas_3449.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABU59499; ABU59499; Rcas_3449.
KEGGirca:Rcas_3449.
PATRICi23345618. VBIRosCas91182_3856.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiAAWAVYF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciRCAS383372:GH89-3492-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 13941 / HLO8Imported.

Entry informationi

Entry nameiA7NPK3_ROSCS
AccessioniPrimary (citable) accession number: A7NPK3
Entry historyi
Integrated into UniProtKB/TrEMBL: October 2, 2007
Last sequence update: October 2, 2007
Last modified: July 22, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.