A7NPK3 (A7NPK3_ROSCS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABU59499.1

Gene names

Ordered Locus Names:

Rcas_3449

Organism

Roseiflexus castenholzii (strain DSM 13941 / HLO8) [Complete proteome] [HAMAP] EMBL ABU59499.1

Taxonomic identifier

383372 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Chloroflexi › Chloroflexi › Chloroflexales › Chloroflexaceae › Roseiflexus › Roseiflexus castenholzii

Protein attributes

Sequence length	544 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABU59499.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A7NPK3 [UniParc]. Last modified October 2, 2007. Version 1. Checksum: F3FB900CD4574F92	FASTA	544	61,647
	10 20 30 40 50 60 MRHFAQLYTD LDETTRTGAK VEALMRYFER AEPADAAWAI FFLIGRRVRQ AVPLPTLRAW 70 80 90 100 110 120 AVEAAGIPDW LLGECYDAVG DFAETVALLL PEPGEWSVDV DRSVLSFEGP QPLHRWVEDV 130 140 150 160 170 180 LIPLRDREEA VQRAIVRAVW ATLGGTERFV WNKLITGAFR VGVSQQLVVR ALARASGTDP 190 200 210 220 230 240 AAIAHRLMGE WQPSAAFYRA LLARETADAD VSRPYPFCLA HPLDDPPETL GSIDEWQAEW 250 260 270 280 290 300 KWDGIRIRLI RRAGQTFLWS RGEELMTDRF PEIAASGALL PDGIVIDGEV LPWKHGTVLP 310 320 330 340 350 360 FAQLQRRIGR KNLTRAVLDE APATLLAYDL IELNGVDVRH QPLEWRRTEL ERLIATCAPD 370 380 390 400 410 420 SQALLLSPVI VAADWDDLAA QWATSRARNV EGLMLKRRNS PYRVGRVRGD WWKWKVAPYT 430 440 450 460 470 480 IDAVLIYAQR GSGKRASLYT DYTFAVWDGD RLTPFAKAYS GLTDDEIREV DAFVRRNTVE 490 500 510 520 530 540 KFGPVRTVTP ALVFELAFEG VQRSNRHKSG IAVRFPRILR WRRDKRPADA DTLERVRALL PEES

References

[1]

"Complete sequence of Roseiflexus castenholzii DSM 13941." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L. , Kyrpides N., Mikhailova N., Bryant D.A., Hanada S., Tsukatani Y., Richardson P. Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 13941 / HLO8.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000804 Genomic DNA. Translation: ABU59499.1.
RefSeq	YP_001433517.1. NC_009767.1.
3D structure databases
ProteinModelPortal	A7NPK3.
ModBase	Search...
Protein-protein interaction databases
STRING	383372.Rcas_3449.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABU59499; ABU59499; Rcas_3449.
GeneID	5540948.
KEGG	rca:Rcas_3449.
PATRIC	23345618. VBIRosCas91182_3856.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	CLSK955115.
Enzyme and pathway databases
BioCyc	RCAS383372:GH89-3505-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A7NPK3_ROSCS

Accession

Primary (citable) accession number: A7NPK3

Entry history

Integrated into UniProtKB/TrEMBL:	October 2, 2007
Last sequence update:	October 2, 2007
Last modified:	May 1, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)