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Protein

Alpha-amylase

Gene

VIBHAR_05253

Organism
Vibrio campbellii (strain ATCC BAA-1116 / BB120)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciVHAR338187:GJCH-4239-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:VIBHAR_05253Imported
ORF Names:M892_25045Imported
OrganismiVibrio campbellii (strain ATCC BAA-1116 / BB120)Imported
Taxonomic identifieri338187 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000008152: Chromosome II

Interactioni

Protein-protein interaction databases

STRINGi338187.VIBHAR_05253.

Structurei

3D structure databases

ProteinModelPortaliA7N642.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000274290.
KOiK01176.
OMAiNEWLAYA.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

A7N642-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSGLQETQST GANVILHAFD WKYADIAQRA AEISELGYGS VLVSPPMKSA
60 70 80 90 100
QDERWWQRYQ PQDYRVIDNA LGNTTDFKNM VEALDRVGVL VYADVVFNHM
110 120 130 140 150
ANEAHLRSDL QYPRQAVMDD YQQNASKYQD LILFGDLSEP LFDENDFVEA
160 170 180 190 200
FGIKDWKDKW EVQNGRISGG PTDPGLPTLR VCKHVVEQQR TYLKALKALG
210 220 230 240 250
VKGFRIDAAK HMTLEHLKLV WTEDITQDVH IFGEIITDGG ATEEEYELFL
260 270 280 290 300
EPYLKETRLG AYDFPLFSTI FKAFSKKGSF KSLIDPYCFG QALSNRRAIT
310 320 330 340 350
FAITHDIPNN DVFLDLVMDE ENEWLAYAYI LGRDGGVPLI YTDLDTSGIK
360 370 380 390 400
GVDGKPRWQN AWKDARMAKV VAFHNLVHGE PMTVLEGNDD MLVLQRGEKG
410 420 430 440
ILVLNKSARA QSLQLTVNKA LVDMMTGEEV PSGEEIKVAA KSAMLLVEK
Length:449
Mass (Da):50,658
Last modified:October 2, 2007 - v1
Checksum:iD2C8C51D7C927C69
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000790 Genomic DNA. Translation: ABU73159.1.
CP006606 Genomic DNA. Translation: AGU97819.1.
RefSeqiWP_011999486.1. NC_022270.1.
YP_001447386.1. NC_009784.1.
YP_008529556.1. NC_022270.1.

Genome annotation databases

EnsemblBacteriaiABU73159; ABU73159; VIBHAR_05253.
AGU97819; AGU97819; M892_25045.
GeneIDi16819128.
5557094.
KEGGivca:M892_25045.
vha:VIBHAR_05253.
PATRICi20134978. VBIVibHar24526_3977.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000790 Genomic DNA. Translation: ABU73159.1.
CP006606 Genomic DNA. Translation: AGU97819.1.
RefSeqiWP_011999486.1. NC_022270.1.
YP_001447386.1. NC_009784.1.
YP_008529556.1. NC_022270.1.

3D structure databases

ProteinModelPortaliA7N642.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi338187.VIBHAR_05253.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABU73159; ABU73159; VIBHAR_05253.
AGU97819; AGU97819; M892_25045.
GeneIDi16819128.
5557094.
KEGGivca:M892_25045.
vha:VIBHAR_05253.
PATRICi20134978. VBIVibHar24526_3977.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000274290.
KOiK01176.
OMAiNEWLAYA.
OrthoDBiEOG6RZB1B.

Enzyme and pathway databases

BioCyciVHAR338187:GJCH-4239-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1116Imported and ATCC BAA-1116 / BB120Imported.
  2. "Vibrio campbellii hmgA-mediated pyomelanization impairs quorum sensing, virulence, and cellular fitness."
    Wang Z., Lin B., Mostaghim A., Rubin R.A., Glaser E.R., Mittraparp-Arthorn P., Thompson J.R., Vuddhakul V., Vora G.J.
    Front. Microbiol. 4:379-379(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC BAA-1116Imported.

Entry informationi

Entry nameiA7N642_VIBCB
AccessioniPrimary (citable) accession number: A7N642
Entry historyi
Integrated into UniProtKB/TrEMBL: October 2, 2007
Last sequence update: October 2, 2007
Last modified: February 4, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.