Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

A7N642

- A7N642_VIBCB

UniProt

A7N642 - A7N642_VIBCB

Protein

Alpha-amylase

Gene

VIBHAR_05253

Organism
Vibrio campbellii (strain ATCC BAA-1116 / BB120)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 46 (01 Oct 2014)
      Sequence version 1 (02 Oct 2007)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

    GO - Molecular functioni

    1. alpha-amylase activity Source: UniProtKB-EC
    2. cation binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: UniProtKB-KW

    Keywords - Molecular functioni

    GlycosidaseUniRule annotation, Hydrolase

    Keywords - Biological processi

    Carbohydrate metabolismUniRule annotation

    Enzyme and pathway databases

    BioCyciVHAR338187:GJCH-4239-MONOMER.

    Protein family/group databases

    CAZyiGH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:VIBHAR_05253Imported
    ORF Names:M892_25045Imported
    OrganismiVibrio campbellii (strain ATCC BAA-1116 / BB120)Imported
    Taxonomic identifieri338187 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000008152: Chromosome II

    Interactioni

    Protein-protein interaction databases

    STRINGi338187.VIBHAR_05253.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0366.
    HOGENOMiHOG000274290.
    KOiK01176.
    OrthoDBiEOG6RZB1B.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PRINTSiPR00110. ALPHAAMYLASE.
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A7N642-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSGLQETQST GANVILHAFD WKYADIAQRA AEISELGYGS VLVSPPMKSA    50
    QDERWWQRYQ PQDYRVIDNA LGNTTDFKNM VEALDRVGVL VYADVVFNHM 100
    ANEAHLRSDL QYPRQAVMDD YQQNASKYQD LILFGDLSEP LFDENDFVEA 150
    FGIKDWKDKW EVQNGRISGG PTDPGLPTLR VCKHVVEQQR TYLKALKALG 200
    VKGFRIDAAK HMTLEHLKLV WTEDITQDVH IFGEIITDGG ATEEEYELFL 250
    EPYLKETRLG AYDFPLFSTI FKAFSKKGSF KSLIDPYCFG QALSNRRAIT 300
    FAITHDIPNN DVFLDLVMDE ENEWLAYAYI LGRDGGVPLI YTDLDTSGIK 350
    GVDGKPRWQN AWKDARMAKV VAFHNLVHGE PMTVLEGNDD MLVLQRGEKG 400
    ILVLNKSARA QSLQLTVNKA LVDMMTGEEV PSGEEIKVAA KSAMLLVEK 449
    Length:449
    Mass (Da):50,658
    Last modified:October 2, 2007 - v1
    Checksum:iD2C8C51D7C927C69
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000790 Genomic DNA. Translation: ABU73159.1.
    CP006606 Genomic DNA. Translation: AGU97819.1.
    RefSeqiWP_011999486.1. NC_022270.1.
    YP_001447386.1. NC_009784.1.
    YP_008529556.1. NC_022270.1.

    Genome annotation databases

    EnsemblBacteriaiABU73159; ABU73159; VIBHAR_05253.
    AGU97819; AGU97819; M892_25045.
    GeneIDi16819128.
    5557094.
    KEGGivca:M892_25045.
    vha:VIBHAR_05253.
    PATRICi20134978. VBIVibHar24526_3977.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000790 Genomic DNA. Translation: ABU73159.1 .
    CP006606 Genomic DNA. Translation: AGU97819.1 .
    RefSeqi WP_011999486.1. NC_022270.1.
    YP_001447386.1. NC_009784.1.
    YP_008529556.1. NC_022270.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 338187.VIBHAR_05253.

    Protein family/group databases

    CAZyi GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABU73159 ; ABU73159 ; VIBHAR_05253 .
    AGU97819 ; AGU97819 ; M892_25045 .
    GeneIDi 16819128.
    5557094.
    KEGGi vca:M892_25045.
    vha:VIBHAR_05253.
    PATRICi 20134978. VBIVibHar24526_3977.

    Phylogenomic databases

    eggNOGi COG0366.
    HOGENOMi HOG000274290.
    KOi K01176.
    OrthoDBi EOG6RZB1B.

    Enzyme and pathway databases

    BioCyci VHAR338187:GJCH-4239-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR006046. Alpha_amylase.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PRINTSi PR00110. ALPHAAMYLASE.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC BAA-1116Imported and ATCC BAA-1116 / BB120Imported.
    2. "Vibrio campbellii hmgA-mediated pyomelanization impairs quorum sensing, virulence, and cellular fitness."
      Wang Z., Lin B., Mostaghim A., Rubin R.A., Glaser E.R., Mittraparp-Arthorn P., Thompson J.R., Vuddhakul V., Vora G.J.
      Front. Microbiol. 4:379-379(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: ATCC BAA-1116Imported.

    Entry informationi

    Entry nameiA7N642_VIBCB
    AccessioniPrimary (citable) accession number: A7N642
    Entry historyi
    Integrated into UniProtKB/TrEMBL: October 2, 2007
    Last sequence update: October 2, 2007
    Last modified: October 1, 2014
    This is version 46 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3