Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

A7N642

- A7N642_VIBCB

UniProt

A7N642 - A7N642_VIBCB

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Alpha-amylase

Gene

VIBHAR_05253

Organism
Vibrio campbellii (strain ATCC BAA-1116 / BB120)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotation, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciVHAR338187:GJCH-4239-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:VIBHAR_05253Imported
ORF Names:M892_25045Imported
OrganismiVibrio campbellii (strain ATCC BAA-1116 / BB120)Imported
Taxonomic identifieri338187 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000008152: Chromosome II

Interactioni

Protein-protein interaction databases

STRINGi338187.VIBHAR_05253.

Structurei

3D structure databases

ProteinModelPortaliA7N642.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000274290.
KOiK01176.
OrthoDBiEOG6RZB1B.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

A7N642-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSGLQETQST GANVILHAFD WKYADIAQRA AEISELGYGS VLVSPPMKSA
60 70 80 90 100
QDERWWQRYQ PQDYRVIDNA LGNTTDFKNM VEALDRVGVL VYADVVFNHM
110 120 130 140 150
ANEAHLRSDL QYPRQAVMDD YQQNASKYQD LILFGDLSEP LFDENDFVEA
160 170 180 190 200
FGIKDWKDKW EVQNGRISGG PTDPGLPTLR VCKHVVEQQR TYLKALKALG
210 220 230 240 250
VKGFRIDAAK HMTLEHLKLV WTEDITQDVH IFGEIITDGG ATEEEYELFL
260 270 280 290 300
EPYLKETRLG AYDFPLFSTI FKAFSKKGSF KSLIDPYCFG QALSNRRAIT
310 320 330 340 350
FAITHDIPNN DVFLDLVMDE ENEWLAYAYI LGRDGGVPLI YTDLDTSGIK
360 370 380 390 400
GVDGKPRWQN AWKDARMAKV VAFHNLVHGE PMTVLEGNDD MLVLQRGEKG
410 420 430 440
ILVLNKSARA QSLQLTVNKA LVDMMTGEEV PSGEEIKVAA KSAMLLVEK
Length:449
Mass (Da):50,658
Last modified:October 2, 2007 - v1
Checksum:iD2C8C51D7C927C69
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000790 Genomic DNA. Translation: ABU73159.1.
CP006606 Genomic DNA. Translation: AGU97819.1.
RefSeqiWP_011999486.1. NC_022270.1.
YP_001447386.1. NC_009784.1.
YP_008529556.1. NC_022270.1.

Genome annotation databases

EnsemblBacteriaiABU73159; ABU73159; VIBHAR_05253.
AGU97819; AGU97819; M892_25045.
GeneIDi16819128.
5557094.
KEGGivca:M892_25045.
vha:VIBHAR_05253.
PATRICi20134978. VBIVibHar24526_3977.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000790 Genomic DNA. Translation: ABU73159.1 .
CP006606 Genomic DNA. Translation: AGU97819.1 .
RefSeqi WP_011999486.1. NC_022270.1.
YP_001447386.1. NC_009784.1.
YP_008529556.1. NC_022270.1.

3D structure databases

ProteinModelPortali A7N642.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 338187.VIBHAR_05253.

Protein family/group databases

CAZyi GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABU73159 ; ABU73159 ; VIBHAR_05253 .
AGU97819 ; AGU97819 ; M892_25045 .
GeneIDi 16819128.
5557094.
KEGGi vca:M892_25045.
vha:VIBHAR_05253.
PATRICi 20134978. VBIVibHar24526_3977.

Phylogenomic databases

eggNOGi COG0366.
HOGENOMi HOG000274290.
KOi K01176.
OrthoDBi EOG6RZB1B.

Enzyme and pathway databases

BioCyci VHAR338187:GJCH-4239-MONOMER.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
PRINTSi PR00110. ALPHAAMYLASE.
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1116Imported and ATCC BAA-1116 / BB120Imported.
  2. "Vibrio campbellii hmgA-mediated pyomelanization impairs quorum sensing, virulence, and cellular fitness."
    Wang Z., Lin B., Mostaghim A., Rubin R.A., Glaser E.R., Mittraparp-Arthorn P., Thompson J.R., Vuddhakul V., Vora G.J.
    Front. Microbiol. 4:379-379(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC BAA-1116Imported.

Entry informationi

Entry nameiA7N642_VIBCB
AccessioniPrimary (citable) accession number: A7N642
Entry historyi
Integrated into UniProtKB/TrEMBL: October 2, 2007
Last sequence update: October 2, 2007
Last modified: October 29, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3